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I am trying to use mobster to run my wgs sample to call MEIs, but I got the error when Mobster call MosaikAligner to run the alignment. Do you have any thoughts about this error?
Thanks,
Guorong
MosaikAligner 2.2.30 2014-06-27
Wan-Ping Lee & Michael Stromberg Marth Lab, Boston College Biology Department
Using the following alignment algorithm: all positions
Using the following alignment mode: aligning reads to all possible locations
Using a maximum mismatch percent threshold of 0.1
Using a hash size of 9
Using 2 processors
Using a Smith-Waterman bandwidth of 25
Using an alignment candidate threshold of 20bp.
Setting hash position threshold to 200
Using a jump database for hashing. Storing keys & positions in memory.
loading reference sequence... finished.
loading jump key database into memory... finished.
loading jump positions database into memory... finished.
I run into the same problem while using MOSAIK on my WGS,
so I issued #21 for replacing MOSAIK with the latest release of bwa mem.
I've tested it works.
The problem is in getting the reference, for which you can see #17 .
Hi Jayne,
I am trying to use mobster to run my wgs sample to call MEIs, but I got the error when Mobster call MosaikAligner to run the alignment. Do you have any thoughts about this error?
Thanks,
Guorong
MosaikAligner 2.2.30 2014-06-27
Wan-Ping Lee & Michael Stromberg Marth Lab, Boston College Biology Department
Aligning read library (16083243):
0% [ ] |Segmentation fault
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