Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

yml file is gone while rerunning cwlexec #15

Closed
adamdingliang opened this issue Jul 22, 2019 · 1 comment
Closed

yml file is gone while rerunning cwlexec #15

adamdingliang opened this issue Jul 22, 2019 · 1 comment
Assignees
@adamdingliang
Labels
bug Something isn't working

Comments

@adamdingliang
Copy link
Collaborator

input yml file is created in a tempory location so that when rerun cwlexec using -r after the workflow exits, it cannot find the yml file.

nodecn202 rdev SJARACNe$ cwlexec -r cd6b10f6-1b94-4a79-a12b-fb5ae7a275ea
[23:15:32.125] INFO - The workflow "sjaracne_workflow" (cd6b10f6-1b94-4a79-a12b-fb5ae7a275ea) started to rerun
The inputsettings file "/research/rgs01/scratch_lsf/lsftmpdir/nodecn232/84338343.tmpdir/tmpug5p74g3/sjaracne_workflow.yml" cannot be accessed.
@adamdingliang adamdingliang added the bug Something isn't working label Jul 22, 2019
@adamdingliang adamdingliang self-assigned this Jul 22, 2019
@adamdingliang
Copy link
Collaborator Author

Create input yml file in given output dir. May not be the best practice though.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@adamdingliang adamdingliang

Labels
bug Something isn't working
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@adamdingliang