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whatsnew2.html
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<h4>What is new in BioLiP2?</h4>
BioLiP2 is a major update released in Febuary 2023. New additions and modifications are listed below.
<table width=100% border=1>
<tr BGCOLOR="#DEDEDE" align=center>
<th>Feature</th>
<th>BioLiP2</th>
<th>BioLiP1</th>
</tr>
<tr BGCOLOR="#F2F2F2" align=center>
<td>Database search</td>
<td>Search by <a href="index.cgi#by_name">name</a>, <a href="index.cgi#by_seq">sequence</a> and <a href="index.cgi#by_struct">structure</a>.</td>
<td>Search by name only</td>
</tr>
<tr BGCOLOR="#F2F2F2" align=center>
<td>Nucleic acid ligands</td>
<td>All DNA/RNA ligands regardless of length. Differentiate DNA vs RNA.</td>
<td><30 nucleotides only. Do not differentiate DNA vs RNA.</td>
</tr>
<tr BGCOLOR="#F2F2F2" align=center>
<td>Nucleic acid sequences</td>
<td><a href="qsearch.cgi?lig3=rna">Viewable</a> and <a href="index.cgi#by_seq">searchable</a>.</td>
<td>Do not include.</td>
</tr>
<tr BGCOLOR="#F2F2F2" align=center>
<td>Source data</td>
<td><a href="https://mmcif.wwpdb.org/dictionaries/mmcif_pdbx_v50.dic/Categories/atom_site.html">mmCIF/PDBx format files</a> from the PDB database.</td>
<td><a href="https://www.wwpdb.org/documentation/file-format-content/format33/sect9.html#ATOM">Legacy PDB format files</a> from the PDB database.</td>
</tr>
<tr BGCOLOR="#F2F2F2" align=center>
<td>Gene Ontology (GO) terms</td>
<td>List GO terms and draws directed acyclic graphs for GO terms and their parents.</td>
<td>Only list terms.</td>
</tr>
<tr BGCOLOR="#F2F2F2" align=center>
<td>Information for small molecule ligands</td>
<td><a href=https://www.wwpdb.org/data/ccd>PDB ligand ID</a>, chemical formula, <a href=https://www.inchi-trust.org/>InChI</a>, SMILES, crosslinks to external small molecule databases (<a href=https://www.ebi.ac.uk/chembl/>ChEMBL</a>, <a href=https://go.drugbank.com/>DrugBank</a>, <a href=https://zinc.docking.org/>ZINC</a>), structure, full name.</td>
<td><a href=https://www.wwpdb.org/data/ccd>PDB ligand ID</a>, chemical formula, structure, full name.</td>
</tr>
<tr BGCOLOR="#F2F2F2" align=center>
<td>Source code</td>
<td>Fully <a href=https://github.com/kad-ecoli/mmCIF2BioLiP>open-source</a>.</td>
<td>Unavailable.</td>
</tr>
</table>
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