HISTORY.md

Version changes and updates

0.1.7 (Not yet released)

• Bugs Fixed
  • When deleting a tool from a WF parent WFs continue having it #156
  • Cannot logout from interlink #157
• Features:
  • PARALLEL execution
  • RUN WORKFLOWS!!
    • Show Report, Logs, Airflow monitor, Netdata monitor
  • Redesigned step break down method so that CWL and airflow extraction is more uniform

0.1.5 (18 February 2020)

• Bugs Fixed
  • Provide the ability to not require static site #136
  • Downloaded bash.sh should not halt execution when input parameters are missing
  • Cannot get DAG from empty workflow #153
• Features:
  • Draft Tools/Data and Workflows #141
  • Offer the ability to disconnect workflows and tools from workflows #155
  • Add execution environment option in profile #142
  • Upvote / Downvote Tools and Workflows #128
  • Preview markdown #135
  • Add execution environment option in profile #142

0.1.4 (21 November 2019)

• Features:
  • Download Workflows in CWL #113
  • Access to basic environment variables #137
  • Add a Download button in Tools #118

0.1.3 (30 October 2019)

• Bugs Fixed:
  • Cannot change the name of a "main" step #134
• Features:
  • Discussion has upvotes/downvotes. Also assign a "Note", "Agree", "Disagree" label in every comment
  • Allow search by username #129
  • Avoid unnecessary comminutation between executor-server #132
  • Add a default "main" step to every new workflow #133

0.1.2 (13 October 2019)

• Features:
  • Add discourse graph. This is a beta, first try.
• Bugs Fixed:
  • Output nodes cannot have the same name as steps in workflows #114
  • Cannot delete input/output node from "-" button #125
  • Tool variable cannot have the "dot" character #117

0.1.1 (30 September 2019)

• Features:
  • Disable "Process DOI" button during process issue
  • Removed a reference to a static site with funding and consortium information issue
• Bugs Fixed:
  • step is lost while being edit in workflow fork action #121
  • Forked WFs were not visible in JStree #120

0.1 (22 July 2019)

• First major release!
• Completely redesigned the UI with Materialize
• Simple, unique Search function. A search returns all relevant ROs.
• Added Questions And Answers as ROs
• Every Tool and Workflow has a Discussion section
• Added Reports
  • Workflows can get downloaded in JSON format or in standaline BASH scripts
  • Upon execution, a "Report" is generated with a unique random id.
  • Reports are visualized in a Timeline
  • Click in a node in the timeline to see the relevant nodes and edges that are running
• Added References
  • Get the details of a Reference from a DOI (with the "PROCESS" button)
  • Get the details of a Reference from a BIBTEX (with the "PROCESS BIBTEX" button)
• Added Users as ROs.
  • Edit the profile of the signed-in user.
  • Show profile info for any user
• Created executor.py that undertakes the task of creating an executable BASH script from a workflow.
• Text in documentation of ROs and in discussion supports markdown.
• Created "innerlinks" Link a RO from another RO:
  • Tools: t/name/version/edit
  • Datasets: d/name/version/edit
  • Workflow: w/name
  • References: r/name
  • Report: report/id
  • question and comments: c/id
• Create permanent links that are clickable from outside the platform
• Edit a RO while browsing other ROs (you can only edit one type of RO at a time though)
• Added (draft) documentation in platform
• Fixed many bugs..

0.0.3 (20 September 2018)

• Checked 3 different libraries for tree integration in angular:
  • https://github.com/wix/angular-tree-control
  • https://github.com/angular-ui-tree/angular-ui-tree
  • https://github.com/ezraroi/ngJsTree
• We chose the last (ngJsTree) because it seemed to be the most actively developed and uses JSTree which has extensive documentation, and community.
• Tool search shows an interactive JStree
• Tools have a Dependencies Tab
  • Users can drag and drop from the search to the dependency tab
  • Users can right click on the dependency graph (only on the top-rooted nodes) to delete dependencies
  • Check if dependency import is correct
• Tools have an Installation Tab
  • Installed ace.js
  • Installation and Validation BASH commands through ace.js
  • Added Variables. Each tools has a set of visible (from other tools/WFs/..) variables.
  • On the top of this tab there is a tree that shows: Dependencies + Variables (of the dependencies)
  • Drag and Drop from variables tree to the ace.js editors (Allow only variables)

0.0.2 (30 August 2018)

• FIX #1: The port on verification URLs is hardcoded
• Created Tool/Data Form
• Responsive UI
• Tools can be created, searched and forked.

0.0.1 (22 August 2018)

• Basic Project setup:
  • Django 2.1
  • Bootstrap 4.1.3
  • JQuery 3.3.1
  • Angular 1.7.2
• Register / Login / Edit User's Profile
• Mail setup with Postfix 3.1.0
• Validate email with token
• Reset email with token