qtlcharts 0.7-8 (2016-06-28)
Add a new chart,
scat2scat. The idea is to summarize each of a long series of scatterplots with a pair of numbers. Then a scatterplot of those summary statistics is linked to the underlying details: click on a point in the main scatterplot and have the underlying scatterplot be shown.
Add a new chart,
itriplot, for plotting trinomial probabilities, represented as points in an equilateral triangle.
idotplotis the main function, and
Add some additional options, such as
Change the name of some options, such as
iplotCurves(in place of
digitsargument for all plot functions, with the aim to reduce the size of the datasets included in the resulting charts.
Removed the vignettes from the package (for complicated reasons); they're available at the R/qtlcharts website.
qtlcharts 0.6-6 (2016-04-21)
Fix proliferation of tool tips
For use with Shiny, clear SVG before drawing
qtlcharts 0.5-25 (2015-11-09)
- Skip Rmd and html tests run on CRAN (so faster, and because the Rmd tests won't work on Solaris as they need pandoc).
qtlcharts 0.5-23 (2015-11-07)
Changed license and author list in order to post the package on CRAN, http://cran.r-project.org
iplotnow use the names of the input data as individual IDs if
indIDis missing or
qtlcharts 0.5-18 (2015-09-02)
- Fixed a bug in
pxgtype="ci". In the case of phenotypes with missing values, the confidence intervals were incorrect.
qtlcharts 0.5-15 (2015-06-24)
scatterplotsthat controls whether scatterplots will be shown when clicking on pixels in the heatmap. (If
scatterplots=FALSE, we skip the scatterplots.)
qtlcharts 0.5-13 (2015-06-08)
iplotMScanonecan plot just points (rather than curves) for the LOD scores and QTL effects in the lower and right-hand panels.
Fix a bug in
iplotMScanone(x-axis labels in right-hand plot weren't being shown)
qtlcharts 0.5-10 (2015-05-28)
qtlcharts 0.5-8 (2015-05-13)
- Got the package working with jsonlite, as htmlwidgets has now switched from RJSONIO to jsonlite, for converting R objects to JSON.
qtlcharts 0.5-4 (2015-03-10)
setScreenSizefunction for controlling the default sizes of charts.
qtlcharts 0.5-3 (2015-03-05)
idotplotfunction for plotting a quantitative variable in different categories. (It's just like
iplotPXG, but with data values not connected to a cross object.)
Reorganized the d3panels code: just using
d3panels.min.cssrather than linking to js code for individual panels.
qtlcharts 0.5-1 (2015-03-05)
To save a plot to a file, you now need to assign the result of a plot function to an object and then use the htmlwidgets function
library(qtlcharts) library(qtl) data(hyper) hyper <- calc.genoprob(hyper, step=1) out <- scanone(hyper) chart <- iplotScanone(out, hyper) htmlwidgets::saveWidget(chart, file="hyper_scanone.html")
It's now simpler to include interactive charts within an R Markdown document. You simply make the plots in a code chunk in the way that you would at the R prompt. There's no longer a need to worry about