Dysgu merge function

[assane-mbodj]

Hi
Thank you for your great tools.
I had a question about the merge function.
I want to merge my different vcf files containing duplicates and I would like to know the properties of this function
does this function merge the same duplicates present on my different samples or does it recover all duplicates at the same time
Thanks in advance

[kcleal]

Hi assane-mbodj, the duplicates are discovered together i.e. across input samples. The vcf records are clustered on a graph, so each connected-component in the graph is considered to represent the same underlying SV. All records for the component are merged into a single row in the final output