/
Render_Centerline.mlab
996 lines (996 loc) · 21.5 KB
/
Render_Centerline.mlab
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// MDL v1 utf8
mevislabVersion = 3.1.1
network {
watchlist = ""
}
module WEMIsoSurface {
internal {
frame = "2377 2741 128 56"
moduleGroupName = ""
windows {
window _default {
geometry = "2827 631 443 395"
sizeHint = "405 369"
wasOpen = no
}
}
}
fields {
instanceName = WEMIsoSurface1
id = 0
autoApply = TRUE
updateMode = AutoUpdate
overwriteLabelDescription = FALSE
label = ""
description = ""
shouldComputeNormals = TRUE
isoMinValue = 1
isoMaxValue = 11
useMinValue = FALSE
useMaxValue = FALSE
cellExtend = "1 1 1"
useWorldCoords = TRUE
useInterpolation = TRUE
useQuadrification = FALSE
useFaceValueList = FALSE
useLUTValueList = FALSE
useValenceThreeRemoval = TRUE
useZeroLengthEdgeRemoval = TRUE
useEdgeRemoval = FALSE
timePointIndex = -1
taskVerboseLogging = FALSE
useVoxelSampling = TRUE
voxelSampling = 1
}
}
module DtfSkeletonization {
internal {
frame = "2264 3175 160 56"
moduleGroupName = ""
showNetworkPanel = true
windows {
window _default {
geometry = "1156 575 330 321"
sizeHint = "328 321"
wasOpen = yes
}
}
}
fields {
instanceName = DtfSkeletonization
updateSkeletonGraph = FALSE
compileGraphVoxels = FALSE
objectMinValue = 1
cavityVolume = 10
maxDistance = 10000
useMaxDistance = FALSE
autoUpdateMode = AutoUpdate
skeletonOnly = TRUE
}
}
module IntervalThreshold {
internal {
frame = "2284 3071 136 56"
moduleGroupName = ""
windows {
window _default {
geometry = "3062 191 403 380"
sizeHint = "403 380"
wasOpen = no
}
}
}
fields {
instanceName = IntervalThreshold2
lowerType = UserDef
innerType = UserDef
upperType = UserDef
centerWidthSet = FALSE
threshCenter = 0.608
threshWidth = 0.784
threshMin = 0.216
threshMax = 1
lowerUserValue = 0
innerUserValue = 0
upperUserValue = 1
changeMinMax = FALSE
changedMin = 0
changedMax = 1000
}
}
module ImagePropertyConvert {
internal {
frame = "2288 2975 160 72"
moduleGroupName = ""
showNetworkPanel = true
windows {
window _default {
geometry = "804 315 326 631"
sizeHint = "326 631"
wasOpen = no
}
}
}
fields {
instanceName = ImagePropertyConvert3
changeDimensionInfo = FALSE
cDimInfo = ""
tDimInfo = ""
uDimInfo = ""
a00 = 1
a01 = 0
a02 = 0
a03 = 0
a10 = 0
a11 = 1
a12 = 0
a13 = 0
a20 = 0
a21 = 0
a22 = 1
a23 = 0
a30 = 0
a31 = 0
a32 = 0
a33 = 1
worldMatrix = "1 0 0 0
0 1 0 0
0 0 1 0
0 0 0 1"
changeDatatype = TRUE
datatype = "unsigned int8"
changePageSize = FALSE
pageSizeX = 32
pageSizeY = 32
pageSizeZ = 1
pageSizeC = 1
pageSizeT = 1
pageSizeU = 1
changeMinGrayValue = FALSE
minGrayValue = 0
changeMaxGrayValue = FALSE
maxGrayValue = 1
changeWorldMatrix = FALSE
voxelSizeX = 1
voxelSizeY = 1
voxelSizeZ = 1
autoApply = TRUE
}
}
module BitMorphology {
internal {
frame = "2375 2865 112 72"
moduleGroupName = ""
showNetworkPanel = true
windows {
window _default {
geometry = "2901 503 339 466"
sizeHint = "339 466"
wasOpen = no
}
}
}
fields {
instanceName = BitMorphology
borderHandling = PadSrcClamp
fillValue = 0
referenceExtentMode = Overlap
kernelX = 3
kernelY = 3
kernelZ = 3
kernelC = 1
kernelT = 1
kernelU = 1
makeSpherical = TRUE
externalKernel = ""
useExternalKernel = FALSE
filterMode = BitDilation
}
}
module MaskToMarkers {
internal {
frame = "2227 2713 152 56"
moduleGroupName = ""
showNetworkPanel = true
windows {
window _default {
geometry = "1397 566 292 174"
sizeHint = "292 174"
wasOpen = no
}
}
}
fields {
instanceName = MaskToMarkers
lowerThreshold = 0
setType = User
type = 0
updateMode = AutoUpdate
vectorMode = Zero
}
}
module Vesselness {
internal {
frame = "2625 3421 96 56"
moduleGroupName = ""
windows {
window _default {
geometry = "1427 780 214 369"
sizeHint = "214 369"
wasOpen = no
}
}
}
fields {
instanceName = Vesselness
startSigma = 1
endSigma = 2
nbrOfScales = 2
unit = mm
calc2D = FALSE
normalizedMeasure = FALSE
darkVessels = FALSE
autoUpdate = FALSE
}
}
module IntervalThreshold {
internal {
frame = "2809 3373 128 56"
moduleGroupName = ""
windows {
window _default {
geometry = "1929 602 403 380"
sizeHint = "403 380"
wasOpen = no
}
}
}
fields {
instanceName = IntervalThreshold
lowerType = UserDef
innerType = ImgOrig
upperType = ImgOrig
centerWidthSet = FALSE
threshCenter = 7237.5
threshWidth = 14395
threshMin = 40
threshMax = 14435
lowerUserValue = 0
innerUserValue = 1
upperUserValue = 1
changeMinMax = FALSE
changedMin = 0
changedMax = 1000
}
}
module BitMorphology {
internal {
frame = "2797 2901 120 72"
moduleGroupName = ""
showNetworkPanel = true
windows {
window _default {
geometry = "2446 407 339 466"
sizeHint = "339 466"
wasOpen = no
}
}
}
fields {
instanceName = BitMorphology1
borderHandling = NoPad
fillValue = 0
referenceExtentMode = Overlap
kernelX = 3
kernelY = 3
kernelZ = 3
kernelC = 1
kernelT = 1
kernelU = 1
makeSpherical = TRUE
externalKernel = ""
useExternalKernel = FALSE
filterMode = BitDilation
}
}
module IntervalThreshold {
internal {
frame = "2525 3525 136 56"
moduleGroupName = ""
windows {
window _default {
geometry = "1512 716 403 380"
sizeHint = "403 380"
wasOpen = no
}
}
}
fields {
instanceName = IntervalThreshold1
lowerType = UserDef
innerType = ImgOrig
upperType = ImgOrig
centerWidthSet = FALSE
threshCenter = 50152
threshWidth = 99696
threshMin = 304
threshMax = 100000
lowerUserValue = 0
innerUserValue = 1
upperUserValue = 0
changeMinMax = FALSE
changedMin = 0
changedMax = 1000
}
}
module OtsuThreshold {
internal {
frame = "2609 3109 144 56"
moduleGroupName = ""
showNetworkPanel = true
windows {
window _default {
geometry = "864 571 206 118"
sizeHint = "206 118"
wasOpen = no
}
}
}
fields {
instanceName = OtsuThreshold
binSize = 512
autoApply = TRUE
backgroundThreshold = 0
threshold = 85
}
}
module Resample3D {
internal {
frame = "2741 2997 104 56"
moduleGroupName = ""
windows {
window _default {
geometry = "803 462 329 337"
sizeHint = "329 337"
wasOpen = no
}
}
}
fields {
instanceName = Resample3D
keep = "Scale factor"
filter = Nearest_Neighbor
isotropic = FALSE
filterAlways = FALSE
filterAlwaysTolerance = 0
zoom = "2 2 2"
imageSize = "380 640 640"
voxelSize = "0.5 0.391877502202985 0.391877502202985"
subVoxelShift = "0 0 0"
useReferenceImage = FALSE
}
}
module Switch {
internal {
frame = "2709 3269 120 72"
moduleGroupName = ""
showNetworkPanel = true
windows {
window _default {
geometry = "1189 582 200 64"
sizeHint = "200 64"
wasOpen = no
}
}
}
fields {
instanceName = Switch
currentInput = 1
numberOfInputs = 2
}
}
module OtsuThreshold {
internal {
frame = "2949 3541 120 56"
moduleGroupName = ""
windows {
window _default {
geometry = "1405 566 206 118"
sizeHint = "206 118"
wasOpen = no
}
}
}
fields {
instanceName = OtsuThreshold1
binSize = 256
autoApply = TRUE
backgroundThreshold = 0
threshold = 304
}
}
module Bypass {
internal {
frame = "2685 3685 104 56"
moduleGroupName = ""
showNetworkPanel = true
}
fields {
instanceName = Bypass
noBypass = FALSE
}
}
module IntervalThreshold {
internal {
frame = "2837 3109 136 56"
moduleGroupName = ""
windows {
window _default {
geometry = "840 465 403 380"
sizeHint = "403 380"
wasOpen = no
}
}
}
fields {
instanceName = IntervalThreshold3
lowerType = UserDef
innerType = UserDef
upperType = UserDef
centerWidthSet = FALSE
threshCenter = 32810
threshWidth = 65450
threshMin = 85
threshMax = 65535
lowerUserValue = 0
innerUserValue = 1
upperUserValue = 1
changeMinMax = FALSE
changedMin = 0
changedMax = 1000
}
}
module ImagePropertyConvert {
internal {
frame = "3093 2837 152 72"
moduleGroupName = ""
showNetworkPanel = true
windows {
window _default {
geometry = "1341 352 326 631"
sizeHint = "326 631"
wasOpen = no
}
}
}
fields {
instanceName = ImagePropertyConvert
changeDimensionInfo = FALSE
cDimInfo = ""
tDimInfo = ""
uDimInfo = ""
a00 = 1
a01 = 0
a02 = 0
a03 = 0
a10 = 0
a11 = 1
a12 = 0
a13 = 0
a20 = 0
a21 = 0
a22 = 1
a23 = 0
a30 = 0
a31 = 0
a32 = 0
a33 = 1
worldMatrix = "1 0 0 0
0 1 0 0
0 0 1 0
0 0 0 1"
changeDatatype = TRUE
datatype = "unsigned int8"
changePageSize = FALSE
pageSizeX = 32
pageSizeY = 32
pageSizeZ = 1
pageSizeC = 1
pageSizeT = 1
pageSizeU = 1
changeMinGrayValue = FALSE
minGrayValue = 0
changeMaxGrayValue = FALSE
maxGrayValue = 1
changeWorldMatrix = FALSE
voxelSizeX = 1
voxelSizeY = 1
voxelSizeZ = 1
autoApply = TRUE
}
}
module View2D {
internal {
frame = "2941 2629 120 56"
moduleGroupName = ""
windows {
window _default {
geometry = "1372 633 400 400"
sizeHint = "400 400"
wasOpen = no
}
}
}
fields {
instanceName = View2D
inventorInputOn = TRUE
inventorOutputOn = FALSE
view2DExtensionsOn = TRUE
startSlice = 319
numSlices = 1
numXSlices = 1
sliceStep = 1
slab = 1
blendMode = BLEND_REPLACE
timePoint = 0
maxTimePoint = 0
filterMode = FILTER_NEAREST
standardKeys = TRUE
cineMode = CINE_ZT
cineDirection = CINE_FORWARD
cineRepeat = CINE_ONCE
cineSpeed = 0.1
cineAlwaysReset = TRUE
snapToCenter = TRUE
zoomMode = VIEW2D_AUTO_ZOOM
unzoomOnImageChange = FALSE
sliceZoom = 3.0999992
sliceZoomSynced = 3.0999992
baseColor = "1 1 1"
margin = "2 2"
sliceOrigin = "128.032241821289 216.096771240234"
useShaders = TRUE
useManagedInteraction = FALSE
lutCenter = 0.5
lutWidth = 1
annotationOn = TRUE
annotationMode = ANNO_MODE_AUTO
annotationSizeMode = ANNO_SHOW_DETAILED
annotationCol = "0.899999976158142 0.899999976158142 0.899999976158142"
annotationFontSize = ANNO_SIZE_AUTO
annoCoords = Voxel
annoCTValue = AsIs
borderOn = FALSE
borderColor = "0.899999976158142 0.899999976158142 0.899999976158142"
valueHighPrecision = TRUE
showColorChannelValues = FALSE
colorChannelSeparator = " / "
maxPrecision = 4
enableSlicing = TRUE
useRelativeLUTIfNoInputImage = TRUE
}
}
module FilterConnectedComponents {
internal {
frame = "2789 2805 216 56"
moduleGroupName = ""
showNetworkPanel = true
windows {
window _default {
geometry = "879 661 350 207"
sizeHint = "350 207"
wasOpen = no
}
}
}
fields {
instanceName = FilterConnectedComponents
updateMode = AutoUpdate
minClusterSize = 500
maxClusterSize = -1
clusterSizeInterpretation = Voxels
shouldInvertSelection = FALSE
selectionMode = AllFiltered
}
}
module ComputeConnectedComponents {
internal {
frame = "2529 2837 240 56"
moduleGroupName = ""
showNetworkPanel = true
windows {
window _default {
geometry = "2311 337 411 324"
sizeHint = "364 324"
wasOpen = no
}
}
}
fields {
instanceName = ComputeConnectedComponents
updateMode = AutoUpdate
neighborhoodRelation = NBH_3D_26_XYZ
backgroundValue = 0
useBackgroundValue = TRUE
useMask = FALSE
clusterMode = IdenticalIntensities
userDataDefault = ImageValue
similarityToleranceIntensities = 0
similarityToleranceVectors = 0.98
}
}
module ConnectedComponentsToImage {
internal {
frame = "2817 2733 240 56"
moduleGroupName = ""
showNetworkPanel = true
windows {
window _default {
geometry = "792 546 350 169"
sizeHint = "350 169"
wasOpen = no
}
}
}
fields {
instanceName = ConnectedComponentsToImage
updateMode = AutoUpdate
writeToImageMode = FixedValues
clusterValue = 1
backgroundValue = 0
useBoundingBoxOfSelectedClusters = FALSE
}
}
module BoolInt {
internal {
frame = "2997 3205 104 56"
moduleGroupName = ""
showNetworkPanel = true
windows {
window _default {
geometry = "863 509 208 243"
sizeHint = "208 243"
wasOpen = no
}
}
}
fields {
instanceName = BoolInt
boolValue = TRUE
invBoolValue = FALSE
intValue = 1
offValue = 0
onValue = 1
defaultBool = Unchanged
}
}
module FieldListener {
internal {
frame = "2565 3189 104 56"
moduleGroupName = ""
windows {
window _default {
geometry = "3357 571 1144 730"
sizeHint = "635 296"
wasOpen = yes
}
}
}
fields {
instanceName = FieldListener
mode = Parameter
inParameter = 85
enableConsoleLog = FALSE
shouldAutoUpdate = TRUE
}
}
module MinMaxScan {
internal {
frame = "3017 3349 192 72"
moduleGroupName = ""
showNetworkPanel = true
}
fields {
instanceName = MinMaxScan
updateMode = AutoUpdate
typeSelect = "Proposed Data Type"
preferredIntType = PreferUnsigned
}
}
module View2D {
internal {
frame = "3109 3117 120 56"
moduleGroupName = ""
windows {
window _default {
geometry = "3060 494 400 400"
sizeHint = "400 400"
wasOpen = no
}
}
}
fields {
instanceName = View2D2
inventorInputOn = TRUE
inventorOutputOn = FALSE
view2DExtensionsOn = TRUE
startSlice = 160
numSlices = 1
numXSlices = 1
sliceStep = 1
slab = 1
blendMode = BLEND_REPLACE
timePoint = 0
maxTimePoint = 0
filterMode = FILTER_LINEAR_POSTCLASS
standardKeys = TRUE
cineMode = CINE_ZT
cineDirection = CINE_FORWARD
cineRepeat = CINE_ONCE
cineSpeed = 0.1
cineAlwaysReset = TRUE
snapToCenter = TRUE
zoomMode = VIEW2D_AUTO_ZOOM
unzoomOnImageChange = FALSE
sliceZoom = 2.5999997
sliceZoomSynced = 2.5999997
baseColor = "1 1 1"
margin = "2 2"
sliceOrigin = "70.5825958251953 118.352767944336"
useShaders = TRUE
useManagedInteraction = FALSE
lutCenter = 1730.13989257812
lutWidth = 2971
annotationOn = TRUE
annotationMode = ANNO_MODE_AUTO
annotationSizeMode = ANNO_SHOW_DETAILED
annotationCol = "0.899999976158142 0.899999976158142 0.899999976158142"
annotationFontSize = ANNO_SIZE_AUTO
annoCoords = Voxel
annoCTValue = AsIs
borderOn = FALSE
borderColor = "0.899999976158142 0.899999976158142 0.899999976158142"
valueHighPrecision = TRUE
showColorChannelValues = FALSE
colorChannelSeparator = " / "
maxPrecision = 4
enableSlicing = TRUE
useRelativeLUTIfNoInputImage = TRUE
}
}
module GVROrthoOverlay {
internal {
frame = "3125 3245 168 56"
moduleGroupName = ""
showNetworkPanel = true
windows {
window _default {
geometry = "772 477 390 307"
sizeHint = "390 307"
wasOpen = no
}
}
}
fields {
instanceName = GVROrthoOverlay
on = TRUE
clipToSlice = TRUE
interpolationMode = FilterNearest
blendMode = Blend
useSceneLut = FALSE
lutCenter = 0.24699999
lutWidth = 0
baseColor = "0.356862992048264 1 0.058823499828577"
baseAlpha = 1
currentTimePoint = 0
}
}
module itkImageFileReader {
internal {
frame = "3421 3317 136 56"
moduleGroupName = ""
windows {
window _default {
geometry = "2723 433 489 503"
sizeHint = "328 395"
wasOpen = no
}
}
}
fields {
instanceName = itkImageFileReader
fileDataType = "unsigned int16"
autoDetermineDataType = TRUE
correctSubVoxelShift = TRUE
fileDimension = 3
info = "Invalid path"
numDims = 0
fileType = TypeNotApplicable
componentType = ""
pixelType = UNKNOWNPIXELTYPE
loaderType = ""
outputMetaDataStr = ""
suppressErrorPosting = FALSE
unresolvedFileName = ""
}
}
module OrthoReformat3 {
internal {
frame = "3413 3221 120 56"
moduleGroupName = ""
windows {
window _default {
geometry = "2751 502 272 256"
sizeHint = "272 256"
wasOpen = no
}
}
}
fields {
instanceName = OrthoReformat3
useGlobalInputImage = TRUE
applyModifyPatientOrientationMatrix = FALSE
modifyPatientOrientationMatrix = "1 0 0 0
0 1 0 0
0 0 1 0
0 0 0 1"
}
}
module Arithmetic2 {
internal {
frame = "3269 2981 104 72"
moduleGroupName = ""
showNetworkPanel = true
windows {
window _default {
geometry = "2711 583 353 94"
sizeHint = "353 94"
wasOpen = no
}
}
}
fields {
instanceName = Arithmetic22
function = Max
outputImageSize = InvalidateOutputIfSizesDiffer
constant = 0
autoReplicate = FALSE
}
}
module IntervalThreshold {
internal {
frame = "3285 3133 136 56"
moduleGroupName = ""
windows {
window _default {
geometry = "2686 440 403 380"
sizeHint = "403 380"
wasOpen = no
}
}
}
fields {
instanceName = IntervalThreshold5
lowerType = UserDef
innerType = UserDef
upperType = UserDef
centerWidthSet = FALSE
threshCenter = 0.25
threshWidth = 0.5
threshMin = 0
threshMax = 0.5
lowerUserValue = 0
innerUserValue = 0
upperUserValue = 1
changeMinMax = FALSE
changedMin = 0
changedMax = 1000
}
}
module Switch {
internal {
frame = "3081 2941 144 72"
moduleGroupName = ""
showNetworkPanel = true
windows {
window _default {
geometry = "2434 585 200 64"
sizeHint = "200 64"
wasOpen = no
}
}
}
fields {
instanceName = Switch1
currentInput = 0
numberOfInputs = 5
}
}
module ImageStatistics {
internal {
frame = "3405 2941 120 56"
moduleGroupName = ""
windows {
window _default {
geometry = "3101 366 458 593"
sizeHint = "458 593"
wasOpen = no
}
}
}
fields {
instanceName = ImageStatistics
innerMin = 0
innerMax = 0
updateMode = AutoUpdate
perSlice = FALSE
currentSlice = 0
lowerWidth = 0
upperWidth = 0
useMask = FALSE
}
}
module BoolInt {
internal {
frame = "3297 2861 112 56"
moduleGroupName = ""
showNetworkPanel = true
windows {
window _default {
geometry = "2783 509 208 243"
sizeHint = "208 243"
wasOpen = no
}
}
}
fields {
instanceName = BoolInt1
boolValue = FALSE
invBoolValue = TRUE
intValue = 0
offValue = 0
onValue = 1
defaultBool = Unchanged
}
}
connections {
WEMIsoSurface1.input0 = ConnectedComponentsToImage.output0
DtfSkeletonization.input0 = BitMorphology1.output0
IntervalThreshold2.input0 = DtfSkeletonization.output0
ImagePropertyConvert3.input0 = IntervalThreshold2.output0
BitMorphology.input0 = ImagePropertyConvert3.output0
MaskToMarkers.input0 = ImagePropertyConvert3.output0
Vesselness.input0 = IntervalThreshold1.output0
IntervalThreshold.input0 = Vesselness.output0
BitMorphology1.input0 = Resample3D.output0
IntervalThreshold1.input0 = Bypass.output0
IntervalThreshold1.threshMin = OtsuThreshold1.threshold
OtsuThreshold.input0 = Switch.output0
Resample3D.input0 = ImagePropertyConvert.output0
Switch.input0 = Vesselness.output0
Switch.input1 = IntervalThreshold.output0
Switch.currentInput = BoolInt.intValue
OtsuThreshold1.input0 = Bypass.output0
IntervalThreshold3.input0 = Switch.output0
IntervalThreshold3.threshMin = OtsuThreshold.threshold
ImagePropertyConvert.input0 = Switch1.output0
View2D.inImage = ConnectedComponentsToImage.output0
FilterConnectedComponents.inClusters = ComputeConnectedComponents.outClusters
ComputeConnectedComponents.input0 = BitMorphology.output0
ConnectedComponentsToImage.inClusters = FilterConnectedComponents.outClusters
FieldListener.inParameter = IntervalThreshold3.threshMin
MinMaxScan.input0 = Vesselness.output0
View2D2.inImage = Bypass.output0
View2D2.inInvPostLUT = GVROrthoOverlay.outScene
GVROrthoOverlay.inImage = MinMaxScan.output0
OrthoReformat3.input0 = itkImageFileReader.output0
Arithmetic22.input0 = IntervalThreshold3.output0
Arithmetic22.input1 = IntervalThreshold5.output0
IntervalThreshold5.input0 = OrthoReformat3.output1
Switch1.input0 = IntervalThreshold3.output0
Switch1.input1 = Arithmetic22.output0
Switch1.currentInput = BoolInt1.intValue
ImageStatistics.input0 = Arithmetic22.output0
BoolInt1.boolValue = ImageStatistics.resultsValid
}
networkModel = ""