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State of the art? #4

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lucidrains opened this issue Mar 6, 2020 · 2 comments
Open

State of the art? #4

lucidrains opened this issue Mar 6, 2020 · 2 comments

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@lucidrains
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Hi! Thanks for your great work. I was wondering if this pre-trained network is state of the art or close? I am interested in doing some pre-training with biological sequences, and could use some guidance. Thank you!
@djinnome
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djinnome commented Mar 6, 2020

Hi @lucidrains
Genomic-UMLFiT is a good guide for pre-training with genomic sequences. If you are interested in guidance for pre-training protein sequences, I would recommend Unified rational protein engineering with sequence-based deep representation learning. You can download their pre-trained models here.

@lucidrains
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@djinnome Thanks for the response! I'm actually interested in both, and I'm aware of both UniRep and Berkeley's TAPE for protein sequences

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@lucidrains @djinnome