Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Unable to access count.pl and statistics.pl in preprocessing/run.sh #5

Closed
NikitaGautam opened this issue Aug 30, 2022 · 3 comments
Closed

Comments

@NikitaGautam
Copy link

https://github.com/kilicogluh/lbd-covid/tree/master/preprocessing

For preprocessing, the given code asks you to run "run.sh", where two pearl scripts are called for before finding concept_degree i.e. count.pl and statistics.pl . In order to run the compute_score script, the script takes concept degree and stats as input to calculate the score. I was wondering if the scripts were missing or was not provided for other reasons. Also, it would be helpful if you could provide if there are any example files for extracted sub_rel_obj, stats, count, and concept degree from the dataset that you used.

@rishabh279
Copy link

Concept Degree and Stats are the outputs that you will get by running count.pl and statitics.pl files. Authors have provided every file required to run the codebase. Please follow run.sh step by step. You will get the results as mentioned in the paper. Thanks.

@NikitaGautam
Copy link
Author

Thanks for the response. Could you pinpoint the location in the directory for the count.pl and statistics.pl? I could not find these files in the preprocessing directory and other directories within the project, that is the reason for the issue creation.

@akastrin akastrin closed this as completed Sep 5, 2022
@NikitaGautam
Copy link
Author

For those who round up with the same issue, install [https://anaconda.org/bioconda/perl-text-nsp] and follow the steps of run.sh.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

3 participants