main.tex

\documentclass[10pt,journal,english,twocolumn]{IEEEtran} % journal two column
%\documentclass[10pt,conference,english,twocolumn]{IEEEtran} % conference two column

%% Language and Typesetting
\usepackage{babel}
\usepackage[babel]{microtype}
\usepackage[babel]{csquotes}

%% Fonts
\usepackage[T1]{fontenc}
\renewcommand*\ttdefault{cmvtt} % Different monospaced font

%% Graphics
\usepackage[svgnames]{xcolor}
\usepackage{graphicx}
\usepackage{tikz}
\usepackage{pgfplots}

%% Tables
\usepackage{tabularx}
\usepackage{booktabs}

%% Math
\usepackage{amsmath}
\usepackage{amsfonts}
\usepackage{amssymb}
\usepackage{amsthm}
\usepackage{bm}
\usepackage{siunitx}
\usepackage{mathtools}
\usepackage{dsfont}

%% Misc
\usepackage[math]{blindtext}

%% Bibliography
\usepackage[backend=biber,url=false,style=ieee,dashed=false,isbn=false,doi=true]{biblatex}
\bibliography{literature.bib}
\renewcommand*{\bibfont}{\small}

%% Hyperref
\usepackage{hyperref}
\hypersetup{
	pdfauthor={},
	pdftitle={},
	bookmarksnumbered=true,
	colorlinks=true,
	allcolors=.,
	urlcolor=MidnightBlue,
}

%% Glossary/Acronyms
\usepackage[acronyms,nomain,xindy,nowarn]{glossaries}
\makeglossaries
\loadglsentries{acronyms.tex}
\setacronymstyle{long-short}
\glsdisablehyper

%% SETUPS
\input{setup-colors.tex}
\input{setup-math.tex}
\input{setup-plots.tex}
\input{setup-misc.tex}




%opening
\title{{{title}}}
\author{{{author}}
%	\thanks{Parts of this work have been presented at the ...~\cite{...}.}
	\thanks{{{affiliation}}}
	\thanks{{{funding}}}
}

\begin{document}
\maketitle

\begin{abstract}\noindent\boldmath
	\todo{Four sentences:}
	\color{blue}
	
	1) State the problem.
	
	2) Say why it is an interesting problem.
	
	3) Say what your solution achieves.
	
	4) Say what follows from your solution.
\end{abstract}
\begin{IEEEkeywords}
	\todo{Keyword 1, Keyword 2, Keyword 3}.
\end{IEEEkeywords}
\glsresetall

\section{Introduction}\label{sec:introduction}
\todo{Add text...}

\section{System Model and Problem Formulation}\label{sec:system-model}


\todo{Add text... \cite{Tse2005}}
\begin{thm}[Name of the Theorem]
	\label{thm:important-theorem}
	This is an important theorem.
\end{thm}
\begin{proof}
	This is obvious.
\end{proof}

You can use the \verb*|\autoref{label}| command to refer to environments and sections like \autoref{thm:important-theorem}.
This automatically adds the name of the environment.

\blinddocument

\section{Plots}
You can find an example plot in \autoref{fig:example} which uses the \texttt{betterplot} style, which is defined in this template.
\begin{figure}
	\centering
	\begin{tikzpicture}% function
		\begin{axis}[
			betterplot,
			xlabel={Label $x$ Axis},
			ylabel={Label $y$ Axis},
			xmin=-5,
			xmax=5,
			]
			\addplot+{sin(deg(x))};
			\addlegendentry{$\sin(x)$};
			\addplot+[samples=100]{sin(2*deg(x))};
			\addlegendentry{$\sin(2x)$};
		\end{axis}
	\end{tikzpicture}
	\caption{Example plot using the custom \texttt{betterplot} style}
	\label{fig:example}
\end{figure}



\section{Conclusion}\label{sec:conclusion}
\todo{Add text...}

\printbibliography
\end{document}