Intel build on Mac OS X

[jbakosi]

Has anyone tried that before?

I get the following link errors:

Undefined symbols for architecture x86_64:
  "__ZNSt3__112basic_stringIcNS_11char_traitsIcEENS_9allocatorIcEEEC1ERKS4_", referenced from:
      __ZNKSt3__115basic_stringbufIcNS_11char_traitsIcEENS_9allocatorIcEEE3strEv in gtest-all.cc.o
      __ZNSt3__1plIcNS_11char_traitsIcEENS_9allocatorIcEEEENS_12basic_stringIT_T0_T1_EERKS9_PKS6_ in gtest-all.cc.o
      __ZNSt3__1plIcNS_11char_traitsIcEENS_9allocatorIcEEEENS_12basic_stringIT_T0_T1_EERKS9_S6_ in gtest-all.cc.o
  "__ZNSt3__112basic_stringIcNS_11char_traitsIcEENS_9allocatorIcEEEC1Ev", referenced from:
      __ZN7testing8internal8FilePath12MakeFileNameERKS1_S3_iPKc in gtest-all.cc.o
      __ZNK7testing8internal8FilePath14RemoveFileNameEv in gtest-all.cc.o
      __ZN7testing8internal15UnitTestOptions17FilterMatchesTestERKNSt3__112basic_stringIcNS2_11char_traitsIcEENS2_9allocatorIcEEEESA_ in gtest-all.cc.o
      __ZN7testing8internal12UnitTestImpl14RecordPropertyERKNS_12TestPropertyE in gtest-all.cc.o
      __ZN7testing8internal24XmlUnitTestResultPrinter26RemoveInvalidXmlCharactersERKNSt3__112basic_stringIcNS2_11char_traitsIcEENS2_9allocatorIcEEEE in gtest-all.cc.o
      __ZN7testing8internal20StringStreamToStringEPNSt3__118basic_stringstreamIcNS1_11char_traitsIcEENS1_9allocatorIcEEEE in gtest-all.cc.o
      __ZN112_INTERNAL_90__Volumes_Storage_jbakosi_code_quinoa_tpl_src_trilinos_commonTools_gtest_gtest_gtest_all_cc_63b69cd67testing8internal21FormatDeathTestOutputERKNSt3__112basic_stringIcNS2_11char_traitsIcEENS2_9allocatorIcEEEE in gtest-all.cc.o
      ...
ld: symbol(s) not found for architecture x86_64
make[6]: *** [commonTools/gtest/libgtest.12.4.2.dylib] Error 1
make[5]: *** [commonTools/gtest/CMakeFiles/gtest.dir/all] Error 2
make[5]: *** Waiting for unfinished jobs....
Undefined symbols for architecture x86_64:
  "__ZNSt3__112basic_stringIcNS_11char_traitsIcEENS_9allocatorIcEEEC1ERKS4_", referenced from:
      __ZNKSt3__115basic_stringbufIcNS_11char_traitsIcEENS_9allocatorIcEEE3strEv in Kokkos_AllocationTracker.cpp.o
      __ZNKSt3__115basic_stringbufIcNS_11char_traitsIcEENS_9allocatorIcEEE3strEv in Kokkos_BasicAllocators.cpp.o
      __ZNKSt3__115basic_stringbufIcNS_11char_traitsIcEENS_9allocatorIcEEE3strEv in Kokkos_Error.cpp.o
      __ZNKSt3__115basic_stringbufIcNS_11char_traitsIcEENS_9allocatorIcEEE3strEv in Kokkos_HostSpace.cpp.o
      __ZNKSt3__115basic_stringbufIcNS_11char_traitsIcEENS_9allocatorIcEEE3strEv in Kokkos_hwloc.cpp.o
      __ZNKSt3__115basic_stringbufIcNS_11char_traitsIcEENS_9allocatorIcEEE3strEv in Kokkos_Shape.cpp.o
      __ZNKSt3__115basic_stringbufIcNS_11char_traitsIcEENS_9allocatorIcEEE3strEv in Kokkos_Threads_TaskPolicy.cpp.o
      ...
  "__ZNSt3__112basic_stringIcNS_11char_traitsIcEENS_9allocatorIcEEEC1Ev", referenced from:
      __ZNSt3__119basic_ostringstreamIcNS_11char_traitsIcEENS_9allocatorIcEEEC1Ej in Kokkos_AllocationTracker.cpp.o
      __ZNSt3__119basic_ostringstreamIcNS_11char_traitsIcEENS_9allocatorIcEEEC1Ej in Kokkos_BasicAllocators.cpp.o
      __ZNSt3__119basic_ostringstreamIcNS_11char_traitsIcEENS_9allocatorIcEEEC1Ej in Kokkos_Error.cpp.o
      __ZN6Kokkos9HostSpaceC1ERKNS0_19AllocationMechanismE in Kokkos_HostSpace.cpp.o
      __ZNSt3__119basic_ostringstreamIcNS_11char_traitsIcEENS_9allocatorIcEEEC1Ej in Kokkos_HostSpace.cpp.o
      __ZNSt3__119basic_ostringstreamIcNS_11char_traitsIcEENS_9allocatorIcEEEC1Ej in Kokkos_hwloc.cpp.o
      __ZNSt3__119basic_ostringstreamIcNS_11char_traitsIcEENS_9allocatorIcEEEC1Ej in Kokkos_Shape.cpp.o
      ...
ld: symbol(s) not found for architecture x86_64
make[6]: *** [packages/kokkos/core/src/libkokkoscore.12.4.2.dylib] Error 1
make[5]: *** [packages/kokkos/core/src/CMakeFiles/kokkoscore.dir/all] Error 2
Undefined symbols for architecture x86_64:
  "__ZNSt3__112basic_stringIcNS_11char_traitsIcEENS_9allocatorIcEEEC1ERKS4_", referenced from:
      __ZNKSt3__115basic_stringbufIcNS_11char_traitsIcEENS_9allocatorIcEEE3strEv in create_inline_mesh.C.o
      __ZNKSt3__115basic_stringbufIcNS_11char_traitsIcEENS_9allocatorIcEEE3strEv in inline_mesh_desc.C.o
      __ZNKSt3__115basic_stringbufIcNS_11char_traitsIcEENS_9allocatorIcEEE3strEv in inline_mesh_driver_lt.C.o
      __ZNKSt3__115basic_stringbufIcNS_11char_traitsIcEENS_9allocatorIcEEE3strEv in legacy_inline_mesh_desc.C.o
      __ZNKSt3__115basic_stringbufIcNS_11char_traitsIcEENS_9allocatorIcEEE3strEv in parse_routines.C.o
      __ZNSt3__1plIcNS_11char_traitsIcEENS_9allocatorIcEEEENS_12basic_stringIT_T0_T1_EERKS9_SB_ in parse_routines.C.o
      __ZNSt3__1plIcNS_11char_traitsIcEENS_9allocatorIcEEEENS_12basic_stringIT_T0_T1_EERKS9_PKS6_ in parse_routines.C.o
      ...
  "__ZNSt3__112basic_stringIcNS_11char_traitsIcEENS_9allocatorIcEEEC1Ev", referenced from:
      __ZN13PAMGEN_NEVADA22Brick_Inline_Mesh_Desc14Calc_IntervalsEv in brick_inline_mesh_desc.C.o
      __ZNSt3__118basic_stringstreamIcNS_11char_traitsIcEENS_9allocatorIcEEEC1Ej in create_inline_mesh.C.o
      __ZN13PAMGEN_NEVADA18Geometry_TransformC1ERKNSt3__112basic_stringIcNS1_11char_traitsIcEENS1_9allocatorIcEEEERNS1_18basic_stringstreamIcS4_S6_EE in geometry_transform.C.o
      __ZNSt3__118basic_stringstreamIcNS_11char_traitsIcEENS_9allocatorIcEEEC1Ej in inline_mesh_desc.C.o
      __ZN13PAMGEN_NEVADA16Inline_Mesh_Desc14Calc_IntervalsEv in inline_mesh_desc.C.o
      __ZNSt3__118basic_stringstreamIcNS_11char_traitsIcEENS_9allocatorIcEEEC1Ej in inline_mesh_driver_lt.C.o
      __ZN13PAMGEN_NEVADA16Inline_Mesh_Desc14Calc_IntervalsEv in legacy_inline_mesh_desc.C.o
      ...
ld: symbol(s) not found for architecture x86_64
make[6]: *** [packages/pamgen/src/libpamgen.12.4.2.dylib] Error 1
make[5]: *** [packages/pamgen/src/CMakeFiles/pamgen.dir/all] Error 2
In file included from /Volumes/Storage/jbakosi/code/quinoa/tpl/src/trilinos/packages/zoltan/src/Utilities/DDirectory/DD_Hash2.c(80):
/Volumes/Storage/jbakosi/code/quinoa/tpl/src/trilinos/packages/zoltan/src/zz/murmur3.c(62): warning #3415: the "always_inline" attribute is ignored on non-inline functions
  static FORCE_INLINE uint32_t fmix32 ( uint32_t h )
         ^

In file included from /Volumes/Storage/jbakosi/code/quinoa/tpl/src/trilinos/packages/zoltan/src/zz/zz_hash.c(84):
/Volumes/Storage/jbakosi/code/quinoa/tpl/src/trilinos/packages/zoltan/src/zz/murmur3.c(62): warning #3415: the "always_inline" attribute is ignored on non-inline functions
  static FORCE_INLINE uint32_t fmix32 ( uint32_t h )
         ^

make[4]: *** [all] Error 2

[crtrott]

I have not tried Intel compiler on MAC, but you might want to post this issue in the Trilinos repo instead. Doesn't seem to be a Kokkos specific problem (i.e. Pamgen shows the same thing). I also don't have an Intel compiler available on Mac to reproduce this.

[hcedwar]

Have you tried a stand-alone Kokkos build instead of a Trilinos build?