Contained are the files needed to recapitulate analysis for the manuscript currently in submission:
A preliminary investigation of the oral microbiome in ankylosing spondylitis and axial spondyloarthritis Jordan E Bisanz, Praema Suppiah, W Murray Thomson, Trudy Milne, Nigel Yeoh, Anita Nolan, Grace Ettinger, Gregor Reid, Gregory B Gloor, Jeremy P Burton, Mary P Cullinan, Simon Stebbings
Contents:
ankspon_analysis.feb13_2016.R: R code necessary to perform statistical analysis and generate figures
td_OTU_RDPlineage_fixed.biom: processed OTU table
as_metadata.txt: sample metadata
as_key.txt: nucleotide barcodes required
demultiplexing_and_processing.sh: script for processing reads (deposited elsewhere) using tools found at github.com/ggloor
as_otu.tree: phylogenetic tree required for phylogenetic diversity analysis