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ultra installation and run error #10
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Hi @unique379r, Glad you got it installed through conda! The fasta/q parser is complaining. This is a well-tested function, so my bet is that there is something wrong with the fasta file. Perhaps you can manually check the first lines with
does everything look as expected for fasta format? the problem is some unicode character seen from the line
It seems to be at the very beginning of the file. Second idea is to try Let me know how it goes. |
On second thought, I don't think the readfq parser handles .gz files, so I would try idea 2 first. It is probably what is causing the error. |
Hey Kristoffer Please take a look error log:
|
The conda installation should install Did you run Otherwise, you can manually install slaMEM easily by:
and then put the resulting binary file Best, |
You don't need to worry about the mummer. It's a fall-back call if slaMEM returns an error. In this case the error was that slaMEM is not found. If you followed the bioconda installation it should have installed it for you. My bet is that you, perhaps, followed only some of the steps in the manual installation. |
Hi there,
Rupesh Kesharwani |
Great that you got it running!
Best, |
Hi
After 3 installation failed from INSTALLATION script, i finally found conda ultra package to install it correctly.Next, i ran the following command to execute for test data but got the error as following:
ERRORS:
Progress log:
Please help.
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