Setting working directory in install_on_local.sh

[phusen]

The script install_on_local.sh sets the variable work_path to $(PWD). In bash, this tries to run the command PWD, which usually doesn't exist. I believe, it should be $PWD, ${PWD} or $(pwd).

alphafold/install_on_local.sh

Line 24 in 21530fa

work_path=$(PWD)

Also, ideally, some quotes should probably be added to support people running this in paths with spaces, eg:

# work_path=/path/to/alphafold-code
work_path="$PWD"
# update openmm 
a="$(which python)"
cd "$(dirname "$(dirname "$a")")/lib/python3.8/site-packages"
patch -p0 < "$work_path/docker/openmm.patch"

[kuixu]

Approved. Thanks for your contribution.