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ValueError: Could not find CIFs in /data01/xukui/alphafold/pdb_mmcif/mmcif_files #17

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linda5mith opened this issue Sep 30, 2022 · 1 comment

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@linda5mith
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Hello, I'm getting this error. Wondering is there a step I missed in setup. Can I download these mmcif files from somewhere? I cannot see them in your repository structure!

Many thanks,
Linda

E0930 14:56:15.892669 139744909522752 templates.py:860] Could not find CIFs in /data01/xukui/alphafold/pdb_mmcif/mmcif_files
Traceback (most recent call last):
  File "run_alphafold.py", line 338, in <module>
    app.run(main)
  File "/home/linda/programs/anaconda3/envs/af2/lib/python3.8/site-packages/absl/app.py", line 312, in run
    _run_main(main, args)
  File "/home/linda/programs/anaconda3/envs/af2/lib/python3.8/site-packages/absl/app.py", line 258, in _run_main
    sys.exit(main(argv))
  File "run_alphafold.py", line 265, in main
    template_featurizer = templates.TemplateHitFeaturizer(
  File "/home/linda/alphafold/alphafold/data/templates.py", line 861, in __init__
    raise ValueError(f'Could not find CIFs in {self._mmcif_dir}')
ValueError: Could not find CIFs in /data01/xukui/alphafold/pdb_mmcif/mmcif_files
@linda5mith
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Nevermind, I see I can download these databases via your scripts in alphafold/scripts

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