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Hi, i run your code successfully but where is performance matrix? In your paper you mentioned accuracy but nowhere in your code it is mentioned #12

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Pranjali87 opened this issue Nov 23, 2023 · 10 comments

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@Pranjali87
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@shuo-zhou
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Hi, could you please let me know details about how you run the experiments, e.g., on a server or a local machine? The performance should be printed out in the console and saved as a .csv file under the repo's directory by default. For example, line 381 to line 391 in imports/train.py for the leave one site out setting can generate such output.

@Pranjali87
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local machine

@shuo-zhou
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local machine

Do you run the code via a terminal or an IDE? Have you been able to check if there is a .csv file created? If feasible, please share with me a screenshot of your program and the code directory.

@Pranjali87
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Hi thanks for getting back to me. I run it on the terminal. I changed paths .csv file is not created. I am attaching screenshots of the files. There I mentioned the
train
utils
fetch_data
cfg
path of my code directory and data.

@Pranjali87
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I got TPE CSV file of 5CV . how can i get 10 CV ,KHSIC and LR weight pickle files?

@shuo-zhou
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Please edit the .yaml file and set METHOD.LOSO to False for 10-fold cross-validation.

@Pranjali87
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thanks a lot

@Pranjali87
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hi. i got all .npy files. but how you get LR_tangent_weights.pkl?

@Pranjali87
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can you please add readme in biomarker study?

@shuo-zhou
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shuo-zhou commented Dec 1, 2023

can you please add readme in biomarker study?

Please see the guide in nilearn's doc if you would like to plot the connectivity.

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