Rqc craches

[wdesouza]

From Bastian:

Error in `/usr/lib/R/bin/exec/R': corrupted size vs. prev_size: 0x0000000017185cd0

Session info:

> sessionINFO()
Error in sessionINFO() : could not find function "sessionINFO"
> sessionInfo()
R version 3.4.4 (2018-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.4 LTS

Matrix products: default
BLAS: /usr/lib/libblas/libblas.so.3.6.0
LAPACK: /usr/lib/lapack/liblapack.so.3.6.0

locale:
 [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=de_AT.UTF-8        LC_COLLATE=en_GB.UTF-8    
 [5] LC_MONETARY=de_AT.UTF-8    LC_MESSAGES=en_GB.UTF-8   
 [7] LC_PAPER=de_AT.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=de_AT.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats4    parallel  stats     graphics  grDevices utils     datasets 
[8] methods   base     

other attached packages:
 [1] Rqc_1.13.0                 ggplot2_3.0.0             
 [3] ShortRead_1.36.1           GenomicAlignments_1.14.2  
 [5] SummarizedExperiment_1.8.1 DelayedArray_0.4.1        
 [7] matrixStats_0.53.1         Biobase_2.38.0            
 [9] Rsamtools_1.30.0           GenomicRanges_1.30.3      
[11] GenomeInfoDb_1.14.0        Biostrings_2.46.0         
[13] XVector_0.18.0             IRanges_2.12.0            
[15] S4Vectors_0.16.0           BiocGenerics_0.24.0       
[17] BiocParallel_1.12.0       

loaded via a namespace (and not attached):
 [1] ProtGenerics_1.10.0           bitops_1.0-6                 
 [3] bit64_0.9-7                   RColorBrewer_1.1-2           
 [5] progress_1.2.0                httr_1.3.1                   
 [7] rprojroot_1.3-2               GenomicFiles_1.14.0          
 [9] tools_3.4.4                   backports_1.1.2              
[11] R6_2.2.2                      rpart_4.1-13                 
[13] Hmisc_4.1-1                   DBI_1.0.0                    
[15] lazyeval_0.2.1                colorspace_1.3-2             
[17] nnet_7.3-12                   withr_2.1.2                  
[19] tidyselect_0.2.4              gridExtra_2.3                
[21] prettyunits_1.0.2             RMySQL_0.10.8                
[23] curl_3.2                      bit_1.1-14                   
[25] compiler_3.4.4                htmlTable_1.12               
[27] rtracklayer_1.38.3            scales_1.0.0                 
[29] checkmate_1.8.5               stringr_1.3.1                
[31] digest_0.6.15                 foreign_0.8-70               
[33] rmarkdown_1.10                dichromat_2.0-0              
[35] base64enc_0.1-3               pkgconfig_2.0.1              
[37] htmltools_0.3.6               ensembldb_2.2.2              
[39] BSgenome_1.46.0               htmlwidgets_1.2              
[41] rlang_0.2.1                   rstudioapi_0.7               
[43] RSQLite_2.1.1                 BiocInstaller_1.28.0         
[45] shiny_1.1.0                   bindr_0.1.1                  
[47] hwriter_1.3.2                 acepack_1.4.1                
[49] dplyr_0.7.6                   VariantAnnotation_1.24.5     
[51] RCurl_1.95-4.10               magrittr_1.5                 
[53] GenomeInfoDbData_1.0.0        Formula_1.2-3                
[55] Matrix_1.2-14                 Rcpp_0.12.18                 
[57] munsell_0.5.0                 stringi_1.2.3                
[59] yaml_2.1.19                   zlibbioc_1.24.0              
[61] AnnotationHub_2.10.1          plyr_1.8.4                   
[63] grid_3.4.4                    blob_1.1.1                   
[65] promises_1.0.1                crayon_1.3.4                 
[67] lattice_0.20-35               splines_3.4.4                
[69] GenomicFeatures_1.30.3        hms_0.4.2                    
[71] knitr_1.20                    pillar_1.2.3                 
[73] markdown_0.8                  reshape2_1.4.3               
[75] biomaRt_2.34.2                XML_3.98-1.11                
[77] glue_1.2.0                    evaluate_0.10.1              
[79] biovizBase_1.26.0             latticeExtra_0.6-28          
[81] data.table_1.11.4             httpuv_1.4.4.2               
[83] gtable_0.2.0                  purrr_0.2.5                  
[85] assertthat_0.2.0              mime_0.5                     
[87] xtable_1.8-2                  AnnotationFilter_1.2.0       
[89] later_0.7.3                   survival_2.42-3              
[91] tibble_1.4.2                  AnnotationDbi_1.40.0         
[93] memoise_1.1.0                 bindrcpp_0.2.2               
[95] cluster_2.0.7-1               interactiveDisplayBase_1.16.0
[97] BiocStyle_2.6.1              
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