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README.md

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README

DBDNMF: A Dual Branch Deep Neural Matrix Factorization Method for Drug Response Prediction

Instructions

main_ccle_kfold.m:DBDNMF for predict CCLE drug prediction(kfold cross-validation)
main_gdsc_kfold.m :DBDNMF for predict GDSC drug prediction(kfold cross-validation)
main_ccle_ger_kfold.m:DBDNMF for predict CCLE drug prediction with global effect removal(kfold cross-validation)
main_gdsc_ger_kfold.m :DBDNMF for predict GDSC drug prediction with global effect removal(kfold cross-validation)
gdsc.csv : Drug response measures (IC50) for the GDSC dataset are accessible at http://www.cancerrxgene.org/downloads
ccle.xlsx : Drug response measures (Activity area) for the CCLE dataset are available at http://www.broadinstitute.org/ccle