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@LanLab

LanLab

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  1. ShigEiFinder ShigEiFinder Public

    Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies

    Python 10 2

  2. MGT_reads2alleles MGT_reads2alleles Public

    Pipeline for converting raw reads into alleles for submission to the MGT website

    Python 1

  3. STECFinder STECFinder Public

    Clustering and Serotyping of Shigatoxin producing E. coli (STEC) using genomic cluster specific markers

    Python 4 2

Repositories

Showing 10 of 14 repositories
  • MGT-local Public

    Install a local blank version of the MGT database

    JavaScript 2 GPL-3.0 2 1 0 Updated Jun 6, 2024
  • debug-mpcr Public

    A script to examine amplicon sequencing of multiplex PCR assays

    Python 0 GPL-3.0 0 0 0 Updated Jun 6, 2024
  • dodge Public

    Dynamic Outbreak Detection for Genomic Epidemiology

    Python 4 GPL-3.0 0 0 0 Updated Jun 3, 2024
  • salty Public

    The Staphylococcus aureus Lineage Typer (SaLTy)

    Python 5 GPL-3.0 0 0 0 Updated May 15, 2024
  • STECFinder Public

    Clustering and Serotyping of Shigatoxin producing E. coli (STEC) using genomic cluster specific markers

    Python 4 GPL-3.0 2 0 0 Updated Mar 19, 2024
  • campygstyper Public

    A python script for accurate assignment of ANI genomic species to Campylobacter genomes.

    Python 0 GPL-3.0 0 0 0 Updated Mar 14, 2024
  • NestedProkkaFix Public

    Script to check for falsely split orthologues in roary outputs

    Python 0 GPL-3.0 0 0 0 Updated Nov 1, 2023
  • ShigEiFinder Public

    Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies

    Python 10 GPL-3.0 2 0 0 Updated Jun 30, 2023
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell 0 MIT 3,105 0 0 Updated Jun 26, 2023
  • WaIS Public

    Where is Insertion Sequence

    Python 0 GPL-3.0 0 0 0 Updated Dec 6, 2022
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