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Select adjoining resolutions based on ARI #60

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lazappi opened this issue Sep 8, 2020 · 0 comments
Open

Select adjoining resolutions based on ARI #60

lazappi opened this issue Sep 8, 2020 · 0 comments
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idea An idea for a new feature

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@lazappi
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lazappi commented Sep 8, 2020

Currently {clustree} assumes the user knows the order of resolutions but this might not always be the case (if a clustering parameter doesn't have a natural order or has a non-linear effect) or it might just be interesting to see a "data-driven" order of resolutions.

One way to come up with an ordering would be to calculate the Adjusted Rand Index between pairs of clustering. Potentially starting with the clustering with most clusters and greedily adding those with highest ARI to build up the tree.

Idea originally from Aaron Lun.

@lazappi lazappi added enhancement New feature or request idea An idea for a new feature and removed enhancement New feature or request labels Sep 8, 2020
@lazappi lazappi added this to New features in clustree v1.0.0 Dec 28, 2020
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