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00-template.Rmd
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00-template.Rmd
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---
title: "**Template**"
subtitle: "Analyzing **scRNA-seq** data with **Bioconductor** for **LCG-EJ-UNAM** March 2020"
author: "[Leonardo Collado-Torres](http://lcolladotor.github.io/)"
date: '`r Sys.Date()`'
output:
xaringan::moon_reader:
lib_dir: libs
css: xaringan-themer.css
nature:
highlightStyle: github
highlightLines: true
countIncrementalSlides: false
includes:
in_header:
- 'gtag.js'
---
```{r setup, include=FALSE}
options(htmltools.dir.version = FALSE)
```
```{r xaringan-themer, include=FALSE}
library(xaringanthemer)
solarized_dark(
code_font_family = "Fira Code",
code_font_url = "https://cdn.rawgit.com/tonsky/FiraCode/1.204/distr/fira_code.css"
)
```
class: inverse
.center[
<a href="https://bioconductor.org/"><img src="https://osca.bioconductor.org/cover.png" style="width: 30%"/></a>
<a rel="license" href="http://creativecommons.org/licenses/by-nc-sa/4.0/"><img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by-nc-sa/4.0/88x31.png" /></a><br />This work is licensed under a <a rel="license" href="http://creativecommons.org/licenses/by-nc-sa/4.0/">Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License</a>.
<a href='https://clustrmaps.com/site/1b5pl' title='Visit tracker'><img src='//clustrmaps.com/map_v2.png?cl=ffffff&w=150&t=n&d=tq5q8216epOrQBSllNIKhXOHUHi-i38brzUURkQEiXw'/></a>
]
.footnote[ Download the materials for this course with `usethis::use_course('lcolladotor/osca_LIIGH_UNAM_2020')` or view online at [**lcolladotor.github.io/osca_LIIGH_UNAM_2020**](http://lcolladotor.github.io/osca_LIIGH_UNAM_2020).]
```{css, echo = FALSE}
/* From https://github.com/yihui/xaringan/issues/147 */
.scroll-output {
height: 80%;
overflow-y: scroll;
}
/* https://stackoverflow.com/questions/50919104/horizontally-scrollable-output-on-xaringan-slides */
pre {
max-width: 100%;
overflow-x: scroll;
}
/* From https://github.com/yihui/xaringan/wiki/Font-Size */
.tiny{
font-size: 40%
}
/* From https://github.com/yihui/xaringan/wiki/Title-slide */
.title-slide {
background-image: url(https://raw.githubusercontent.com/Bioconductor/OrchestratingSingleCellAnalysis/master/images/Workflow.png);
background-size: 33%;
background-position: 0% 100%
}
```
---
class: middle
.center[
# Thanks!
Slides created via the R package [**xaringan**](https://github.com/yihui/xaringan) and themed with [**xaringanthemer**](https://github.com/gadenbuie/xaringanthemer).
This course is based on the book [**Orchestrating Single Cell Analysis with Bioconductor**](https://osca.bioconductor.org/) by [Aaron Lun](https://www.linkedin.com/in/aaron-lun-869b5894/), [Robert Amezquita](https://robertamezquita.github.io/), [Stephanie Hicks](https://www.stephaniehicks.com/) and [Raphael Gottardo](http://rglab.org), plus [**WEHI's scRNA-seq course**](https://drive.google.com/drive/folders/1cn5d-Ey7-kkMiex8-74qxvxtCQT6o72h) by [Peter Hickey](https://www.peterhickey.org/).
You can find the files for this course at [lcolladotor/osca_LIIGH_UNAM_2020](https://github.com/lcolladotor/osca_LIIGH_UNAM_2020).
Instructor: [**Leonardo Collado-Torres**](http://lcolladotor.github.io/).
<a href="https://www.libd.org"><img src="img/LIBD_logo.jpg" style="width: 20%" /></a>
]
.footnote[ Download the materials for this course with `usethis::use_course('lcolladotor/osca_LIIGH_UNAM_2020')` or view online at [**lcolladotor.github.io/osca_LIIGH_UNAM_2020**](http://lcolladotor.github.io/osca_LIIGH_UNAM_2020).]
---
# R session information
.scroll-output[
.tiny[
```{r 'reproducibility', cache = TRUE, dependson=knitr::all_labels()}
options(width = 120)
sessioninfo::session_info()
```
]]