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Ensure memote-style tests work with most of the recognized namespaces by default #26

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stelmo opened this issue Oct 15, 2022 · 0 comments

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stelmo commented Oct 15, 2022

Many of the config structs have dictionaries like

Dict(
        "trp__L" => "trp__L_c", 
        "cys__L" => "cys__L_c",
...
)

that map standard ids to namespace specific ids (in this case bigg). Change this to something like

Dict(
        "trp__L" => ["trp__L_c", "MNXM741553", "chebi:57912", ...], 
...
)

and modify the checking functions to make the default behavior more robust.

exaexa added the 🌟 label

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