Added linux compiled code for distribution

cianfrocco-lab · Apr 27, 2017 · e386bb0 · e386bb0
1 parent 0e889bc
commit e386bb0
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diff --git a/aws_aliases_linux.sh b/aws_aliases_linux.sh
@@ -0,0 +1,38 @@
+#Set paths
+export AWS_CLI_DIR=$AWS_DIR/aws/
+export AWS_RELION=$AWS_DIR/relion/
+export AWS_ROSETTA=$AWS_DIR/rosetta/
+export PATH=$AWS_CLI_DIR/:$PATH
+export PATH=$AWS_RELION/:$PATH
+export PATH=$AWS_ROSETTA/:$PATH
+##List all instances for given user (based on tag)
+alias awsls=$AWS_CLI_DIR/list_instances.py
+##Kill specified instance 
+alias awskill=$AWS_CLI_DIR/kill_instance.py 
+##Alias launch command
+alias awslaunch=$AWS_CLI_DIR/launch_AWS_instance.py
+##Alias launch group of instances command
+alias awslaunch_movieAlign=$AWS_CLI_DIR/launch_AWS_S3Movie_Alignment.py
+#Create volume
+alias aws_ebs_create=$AWS_CLI_DIR/create_volume.py
+#Delete volume
+alias aws_ebs_delete=$AWS_CLI_DIR/kill_volume.py
+#Commands available
+#Attach volume
+alias aws_ebs_attach=$AWS_CLI_DIR/attach_volume.py
+#Attach volume
+alias aws_ebs_detach=$AWS_CLI_DIR/detach_volume.py
+#List spot price
+alias aws_spot_price_history=$AWS_CLI_DIR/list_spot_price.py
+#Admin list
+alias awsls_admin=$AWS_CLI_DIR/list_all.py
+#Launch cluster
+alias awslaunch_cluster=$AWS_CLI_DIR/launch_starcluster.py
+#Relion QSUB command
+export RELION_QSUB_TEMPLATE=$AWS_RELION/relion_qsub.sh
+#Export directory to path
+export PATH=$AWS_CLI_DIR/:$PATH
+#Create snapshot
+alias aws_snapshot_create=$AWS_CLI_DIR/create_snapshot.py
+#Delete snapshot
+alias aws_snapshot_delete=$AWS_CLI_DIR/kill_snapshot.py
diff --git a/aws_build_linux/attach_volume.py b/aws_build_linux/attach_volume.py
diff --git a/aws_build_linux/aws_help b/aws_build_linux/aws_help
diff --git a/aws_build_linux/aws_list_projects b/aws_build_linux/aws_list_projects
diff --git a/aws_build_linux/aws_project_delete b/aws_build_linux/aws_project_delete
diff --git a/aws_build_linux/aws_project_initialize b/aws_build_linux/aws_project_initialize
diff --git a/aws_build_linux/aws_project_remove_directory b/aws_build_linux/aws_project_remove_directory
diff --git a/aws_build_linux/aws_project_sync b/aws_build_linux/aws_project_sync
diff --git a/aws_build_linux/create_snapshot.py b/aws_build_linux/create_snapshot.py
diff --git a/aws_build_linux/create_volume.py b/aws_build_linux/create_volume.py
diff --git a/aws_build_linux/create_volume_IOPS.py b/aws_build_linux/create_volume_IOPS.py
diff --git a/aws_build_linux/delete_temp_s3_ebs b/aws_build_linux/delete_temp_s3_ebs
diff --git a/aws_build_linux/detach_volume.py b/aws_build_linux/detach_volume.py
diff --git a/aws_build_linux/kill_instance.py b/aws_build_linux/kill_instance.py
diff --git a/aws_build_linux/kill_snapshot.py b/aws_build_linux/kill_snapshot.py
diff --git a/aws_build_linux/kill_volume.py b/aws_build_linux/kill_volume.py
diff --git a/aws_build_linux/launch_AWS_S3Movie_Alignment.py b/aws_build_linux/launch_AWS_S3Movie_Alignment.py
diff --git a/aws_build_linux/launch_AWS_instance.py b/aws_build_linux/launch_AWS_instance.py
diff --git a/aws_build_linux/launch_starcluster.py b/aws_build_linux/launch_starcluster.py
diff --git a/aws_build_linux/list_all.py b/aws_build_linux/list_all.py
diff --git a/aws_build_linux/list_instances.py b/aws_build_linux/list_instances.py
diff --git a/aws_build_linux/list_spot_price.py b/aws_build_linux/list_spot_price.py
diff --git a/aws_build_linux/qsub_aws b/aws_build_linux/qsub_aws