LSTMProteinFolding

Had the idea of using LSTM RNNs to predict protein folding. The way I did this was consider protein folding as a linear transformation from R^3 to R^3 of atom coordinates. I first arrange the atoms of an amino acid in their relative positions accoording to their PDB files, and then arrange the amino acids in a straight line on the x-axis. These are the inputs for a single protein, and the output is the atom coordinates from the folded protein's PDB file.

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
README.md		README.md
alanine (1).pdb		alanine (1).pdb
alanine.pdb		alanine.pdb
arginine.pdb		arginine.pdb
asparagine.pdb		asparagine.pdb
aspartate.pdb		aspartate.pdb
cysteine.pdb		cysteine.pdb
glutamate.pdb		glutamate.pdb
glutamine.pdb		glutamine.pdb
glycine.pdb		glycine.pdb
histidine (1).pdb		histidine (1).pdb
histidine.pdb		histidine.pdb
isoleucine.pdb		isoleucine.pdb
leucine.pdb		leucine.pdb
lysine.pdb		lysine.pdb
methionine.pdb		methionine.pdb
pcho.pdb		pcho.pdb
pdb2mx7.ent		pdb2mx7.ent
pdbparser.js		pdbparser.js
phenylalanine.pdb		phenylalanine.pdb
proline.pdb		proline.pdb
serine.pdb		serine.pdb
stuff.py		stuff.py
tbubrchcis.pdb		tbubrchcis.pdb
threonine.pdb		threonine.pdb
tryptophan.pdb		tryptophan.pdb
tyrosine.pdb		tyrosine.pdb
valine.pdb		valine.pdb

lf2225/LSTMProteinFolding

Folders and files

Latest commit

History

Repository files navigation

LSTMProteinFolding

About

Resources

Stars

Watchers

Forks

Languages