You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
@wilsontom and @lgatto, a question: if you run an SRM/MRM experiment and have multiple files (e.g. for multiple samples), you will always have chromatograms for the same ions in each file, right? In other words, the Q1 m/z and the Q3 m/z are supposed to be identical across files. Is the retention time window also expected to be the exact same?
If that's the case, we can use the Chromatograms object to represent a SRM or MRM experiment. The Chromatograms organizes Chromatogram objects in a 2-dimensional array, columns being samples, rows chromatograms for the same m/z value (or m/z value range).
If there is the possibility that two files have chromatograms for completely different (and unrelated) ions (m/z) we have to implement a different object that would be more like the MSnExp that organizes Spectrum objects in one dimension.
Implement a
readChromData
(orreadChromatograms
) function to read chromatogram data from an mzML file.This relates to sneumann/mzR#141 in
mzR
.The text was updated successfully, but these errors were encountered: