HOLE analysis --- :mod:`MDAnalysis.analysis.hole2`
| Author: | Lily Wang |
|---|---|
| Year: | 2020 |
| Copyright: | GNU Public License v3 |
.. versionadded:: 1.0.0
This module provides an updated interface for the HOLE_ suite of tools [Smart1993]_ [Smart1996]_ to analyse an ion channel pore or transporter pathway [Stelzl2014]_ as a function of time or arbitrary order parameters. It replaces :mod:`MDAnalysis.analysis.hole`.
HOLE_ must be installed separately and can be obtained in binary form from http://www.holeprogram.org/ or as source from https://github.com/osmart/hole2. (HOLE is open source and available under the Apache v2.0 license.)
.. automodule:: MDAnalysis.analysis.hole2.hole
:members:
.. automodule:: MDAnalysis.analysis.hole2.utils
:members:
.. automodule:: MDAnalysis.analysis.hole2.templates
:members: