Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

docker storage container keeps restarting #978

Open
Pin0 opened this issue Feb 2, 2024 · 6 comments
Open

docker storage container keeps restarting #978

Pin0 opened this issue Feb 2, 2024 · 6 comments

Comments

@Pin0
Copy link

Pin0 commented Feb 2, 2024

I'm proably doing something wrong here. I followed the readme on the letter. De application runs but I get errors on the pipeline page.

Can't load data
Request failed with status: 500.
Please try it again later.

Closer inspections shows an 500 internal server error in http://localhost:8080/api/v1/pipelines-list
with the following response:

{
"error": {
"type": "errors.CONNECTION",
"source": "FRONTEND"
}
}

Closer looking at the docker containers the storage container keeps restarting I think that is related.

Sorry for the long docker log...

2024-02-02 16:52:18 15:52:18,100 [main           ] DEBUG com.linkedpipes.etl.storage.cli.ConfigurationLoader          - Reading configuration from: /opt/lp-etl/configuration/configuration.properties
2024-02-02 16:52:18 15:52:18,103 [main           ] WARN  com.linkedpipes.etl.storage.cli.ConfigurationLoader          - Properties configuration files are deprecated.
2024-02-02 16:52:18 15:52:18,680 [main           ] DEBUG com.linkedpipes.etl.storage.plugin.JavaPluginService         - Loading plugins ...
2024-02-02 16:52:19 15:52:19,337 [main           ] INFO  com.linkedpipes.etl.storage.plugin.JavaPluginService         - Loading plugins ... done with 97 plugins
2024-02-02 16:52:19 15:52:19,341 [main           ] WARN  org.springframework.context.support.ClassPathXmlApplicationContext - Exception encountered during context initialization - cancelling refresh attempt: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'storageService': Invocation of init method failed
2024-02-02 16:52:19 Exception in thread "main" org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'storageService': Invocation of init method failed
2024-02-02 16:52:19     at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:196)
2024-02-02 16:52:19     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:419)
2024-02-02 16:52:19     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1762)
2024-02-02 16:52:19     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:598)
2024-02-02 16:52:19     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:520)
2024-02-02 16:52:19     at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:326)
2024-02-02 16:52:19     at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234)
2024-02-02 16:52:19     at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:324)
2024-02-02 16:52:19     at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:200)
2024-02-02 16:52:19     at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:973)
2024-02-02 16:52:19     at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:941)
2024-02-02 16:52:19     at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:608)
2024-02-02 16:52:19     at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:144)
2024-02-02 16:52:19     at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:85)
2024-02-02 16:52:19     at com.linkedpipes.etl.storage.Storage.startSpring(Storage.java:87)
2024-02-02 16:52:19     at com.linkedpipes.etl.storage.Storage.run(Storage.java:33)
2024-02-02 16:52:19     at com.linkedpipes.etl.storage.Storage.main(Storage.java:23)
2024-02-02 16:52:19 Caused by: com.linkedpipes.etl.storage.StorageException: Can't read repository info file '/data/lp-etl/storage/repository-info.json'.
2024-02-02 16:52:19     at com.linkedpipes.etl.storage.template.repository.RepositoryInfo.load(RepositoryInfo.java:44)
2024-02-02 16:52:19     at com.linkedpipes.etl.storage.template.repository.TemplateRepositoryFactory.loadRepositoryInfo(TemplateRepositoryFactory.java:86)
2024-02-02 16:52:19     at com.linkedpipes.etl.storage.template.repository.TemplateRepositoryFactory.create(TemplateRepositoryFactory.java:37)
2024-02-02 16:52:19     at com.linkedpipes.etl.storage.StorageService.initializeTemplateRepository(StorageService.java:109)
2024-02-02 16:52:19     at com.linkedpipes.etl.storage.StorageService.initialize(StorageService.java:72)
2024-02-02 16:52:19     at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
2024-02-02 16:52:19     at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
2024-02-02 16:52:19     at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
2024-02-02 16:52:19     at java.base/java.lang.reflect.Method.invoke(Method.java:568)
2024-02-02 16:52:19     at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleElement.invoke(InitDestroyAnnotationBeanPostProcessor.java:425)
2024-02-02 16:52:19     at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleMetadata.invokeInitMethods(InitDestroyAnnotationBeanPostProcessor.java:369)
2024-02-02 16:52:19     at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:193)
2024-02-02 16:52:19     ... 16 more
2024-02-02 16:52:19 Caused by: com.fasterxml.jackson.databind.exc.MismatchedInputException: No content to map due to end-of-input
2024-02-02 16:52:19  at [Source: (File); line: 1, column: 0]
2024-02-02 16:52:19     at com.fasterxml.jackson.databind.exc.MismatchedInputException.from(MismatchedInputException.java:59)
2024-02-02 16:52:19     at com.fasterxml.jackson.databind.ObjectMapper._initForReading(ObjectMapper.java:4916)
2024-02-02 16:52:19     at com.fasterxml.jackson.databind.ObjectMapper._readMapAndClose(ObjectMapper.java:4818)
2024-02-02 16:52:19     at com.fasterxml.jackson.databind.ObjectMapper.readValue(ObjectMapper.java:3637)
2024-02-02 16:52:19     at com.linkedpipes.etl.storage.template.repository.RepositoryInfo.load(RepositoryInfo.java:42)
2024-02-02 16:52:19     ... 27 more
2024-02-02 16:53:21 Exception in thread "main" org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'storageService': Invocation of init method failed
2024-02-02 16:53:21     at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:196)
2024-02-02 16:53:21     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:419)
2024-02-02 16:53:21     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1762)
2024-02-02 16:53:21     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:598)
2024-02-02 16:53:21     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:520)
2024-02-02 16:53:21     at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:326)
2024-02-02 16:53:21     at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234)
2024-02-02 16:53:21     at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:324)
2024-02-02 16:53:21     at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:200)
2024-02-02 16:53:21     at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:973)
2024-02-02 16:53:21     at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:941)
2024-02-02 16:53:21     at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:608)
2024-02-02 16:53:21     at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:144)
2024-02-02 16:53:21     at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:85)
2024-02-02 16:53:20 15:53:20,143 [main           ] DEBUG com.linkedpipes.etl.storage.cli.ConfigurationLoader          - Reading configuration from: /opt/lp-etl/configuration/configuration.properties
2024-02-02 16:53:20 15:53:20,147 [main           ] WARN  com.linkedpipes.etl.storage.cli.ConfigurationLoader          - Properties configuration files are deprecated.
2024-02-02 16:53:20 15:53:20,916 [main           ] DEBUG com.linkedpipes.etl.storage.plugin.JavaPluginService         - Loading plugins ...
2024-02-02 16:53:21 15:53:21,808 [main           ] INFO  com.linkedpipes.etl.storage.plugin.JavaPluginService         - Loading plugins ... done with 97 plugins
2024-02-02 16:53:21 15:53:21,815 [main           ] WARN  org.springframework.context.support.ClassPathXmlApplicationContext - Exception encountered during context initialization - cancelling refresh attempt: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'storageService': Invocation of init method failed
2024-02-02 16:53:21     at com.linkedpipes.etl.storage.Storage.startSpring(Storage.java:87)
2024-02-02 16:53:21     at com.linkedpipes.etl.storage.Storage.run(Storage.java:33)
2024-02-02 16:53:21     at com.linkedpipes.etl.storage.Storage.main(Storage.java:23)
2024-02-02 16:53:21 Caused by: com.linkedpipes.etl.storage.StorageException: Can't read repository info file '/data/lp-etl/storage/repository-info.json'.
2024-02-02 16:53:21     at com.linkedpipes.etl.storage.template.repository.RepositoryInfo.load(RepositoryInfo.java:44)
2024-02-02 16:53:21     at com.linkedpipes.etl.storage.template.repository.TemplateRepositoryFactory.loadRepositoryInfo(TemplateRepositoryFactory.java:86)
2024-02-02 16:53:21     at com.linkedpipes.etl.storage.template.repository.TemplateRepositoryFactory.create(TemplateRepositoryFactory.java:37)
2024-02-02 16:53:21     at com.linkedpipes.etl.storage.StorageService.initializeTemplateRepository(StorageService.java:109)
2024-02-02 16:53:21     at com.linkedpipes.etl.storage.StorageService.initialize(StorageService.java:72)
2024-02-02 16:53:21     at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
2024-02-02 16:53:21     at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
2024-02-02 16:53:21     at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
2024-02-02 16:53:21     at java.base/java.lang.reflect.Method.invoke(Method.java:568)
2024-02-02 16:53:21     at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleElement.invoke(InitDestroyAnnotationBeanPostProcessor.java:425)
2024-02-02 16:53:21     at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleMetadata.invokeInitMethods(InitDestroyAnnotationBeanPostProcessor.java:369)
2024-02-02 16:53:21     at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:193)
2024-02-02 16:53:21     ... 16 more
2024-02-02 16:53:21 Caused by: com.fasterxml.jackson.databind.exc.MismatchedInputException: No content to map due to end-of-input
2024-02-02 16:53:21  at [Source: (File); line: 1, column: 0]
2024-02-02 16:53:21     at com.fasterxml.jackson.databind.exc.MismatchedInputException.from(MismatchedInputException.java:59)
2024-02-02 16:53:21     at com.fasterxml.jackson.databind.ObjectMapper._initForReading(ObjectMapper.java:4916)
2024-02-02 16:53:21     at com.fasterxml.jackson.databind.ObjectMapper._readMapAndClose(ObjectMapper.java:4818)
2024-02-02 16:53:21     at com.fasterxml.jackson.databind.ObjectMapper.readValue(ObjectMapper.java:3637)
2024-02-02 16:53:21     at com.linkedpipes.etl.storage.template.repository.RepositoryInfo.load(RepositoryInfo.java:42)
2024-02-02 16:53:21     ... 27 more
2024-02-02 16:54:24 Exception in thread "main" org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'storageService': Invocation of init method failed
2024-02-02 16:54:24     at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:196)
2024-02-02 16:54:24     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:419)
2024-02-02 16:54:24     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1762)
2024-02-02 16:54:24     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:598)
2024-02-02 16:54:24     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:520)
2024-02-02 16:54:24     at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:326)
2024-02-02 16:54:24     at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234)
2024-02-02 16:54:24     at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:324)
2024-02-02 16:54:24     at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:200)
2024-02-02 16:54:24     at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:973)
2024-02-02 16:54:24     at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:941)
2024-02-02 16:54:24     at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:608)
2024-02-02 16:54:24     at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:144)
2024-02-02 16:54:24     at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:85)
2024-02-02 16:54:24     at com.linkedpipes.etl.storage.Storage.startSpring(Storage.java:87)
2024-02-02 16:54:24     at com.linkedpipes.etl.storage.Storage.run(Storage.java:33)
2024-02-02 16:54:24     at com.linkedpipes.etl.storage.Storage.main(Storage.java:23)
2024-02-02 16:54:24 Caused by: com.linkedpipes.etl.storage.StorageException: Can't read repository info file '/data/lp-etl/storage/repository-info.json'.
2024-02-02 16:54:24     at com.linkedpipes.etl.storage.template.repository.RepositoryInfo.load(RepositoryInfo.java:44)
2024-02-02 16:54:24     at com.linkedpipes.etl.storage.template.repository.TemplateRepositoryFactory.loadRepositoryInfo(TemplateRepositoryFactory.java:86)
2024-02-02 16:54:24     at com.linkedpipes.etl.storage.template.repository.TemplateRepositoryFactory.create(TemplateRepositoryFactory.java:37)
2024-02-02 16:54:22 15:54:22,649 [main           ] DEBUG com.linkedpipes.etl.storage.cli.ConfigurationLoader          - Reading configuration from: /opt/lp-etl/configuration/configuration.properties
2024-02-02 16:54:22 15:54:22,653 [main           ] WARN  com.linkedpipes.etl.storage.cli.ConfigurationLoader          - Properties configuration files are deprecated.
2024-02-02 16:54:23 15:54:23,372 [main           ] DEBUG com.linkedpipes.etl.storage.plugin.JavaPluginService         - Loading plugins ...
2024-02-02 16:54:24 15:54:24,185 [main           ] INFO  com.linkedpipes.etl.storage.plugin.JavaPluginService         - Loading plugins ... done with 97 plugins
2024-02-02 16:54:24 15:54:24,190 [main           ] WARN  org.springframework.context.support.ClassPathXmlApplicationContext - Exception encountered during context initialization - cancelling refresh attempt: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'storageService': Invocation of init method failed
2024-02-02 16:54:24     at com.linkedpipes.etl.storage.StorageService.initializeTemplateRepository(StorageService.java:109)
2024-02-02 16:54:24     at com.linkedpipes.etl.storage.StorageService.initialize(StorageService.java:72)
2024-02-02 16:54:24     at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
2024-02-02 16:54:24     at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
2024-02-02 16:54:24     at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
2024-02-02 16:54:24     at java.base/java.lang.reflect.Method.invoke(Method.java:568)
2024-02-02 16:54:24     at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleElement.invoke(InitDestroyAnnotationBeanPostProcessor.java:425)
2024-02-02 16:54:24     at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleMetadata.invokeInitMethods(InitDestroyAnnotationBeanPostProcessor.java:369)
2024-02-02 16:54:24     at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:193)
2024-02-02 16:54:24     ... 16 more
2024-02-02 16:54:24 Caused by: com.fasterxml.jackson.databind.exc.MismatchedInputException: No content to map due to end-of-input
2024-02-02 16:54:24  at [Source: (File); line: 1, column: 0]
2024-02-02 16:54:24     at com.fasterxml.jackson.databind.exc.MismatchedInputException.from(MismatchedInputException.java:59)
2024-02-02 16:54:24     at com.fasterxml.jackson.databind.ObjectMapper._initForReading(ObjectMapper.java:4916)
2024-02-02 16:54:24     at com.fasterxml.jackson.databind.ObjectMapper._readMapAndClose(ObjectMapper.java:4818)
2024-02-02 16:54:24     at com.fasterxml.jackson.databind.ObjectMapper.readValue(ObjectMapper.java:3637)
2024-02-02 16:54:24     at com.linkedpipes.etl.storage.template.repository.RepositoryInfo.load(RepositoryInfo.java:42)
2024-02-02 16:54:24     ... 27 more
2024-02-02 16:55:25 15:55:25,034 [main           ] DEBUG com.linkedpipes.etl.storage.cli.ConfigurationLoader          - Reading configuration from: /opt/lp-etl/configuration/configuration.properties
2024-02-02 16:55:25 15:55:25,037 [main           ] WARN  com.linkedpipes.etl.storage.cli.ConfigurationLoader          - Properties configuration files are deprecated.
2024-02-02 16:55:25 15:55:25,622 [main           ] DEBUG com.linkedpipes.etl.storage.plugin.JavaPluginService         - Loading plugins ...
2024-02-02 16:55:26 15:55:26,345 [main           ] INFO  com.linkedpipes.etl.storage.plugin.JavaPluginService         - Loading plugins ... done with 97 plugins
2024-02-02 16:55:26 15:55:26,349 [main           ] WARN  org.springframework.context.support.ClassPathXmlApplicationContext - Exception encountered during context initialization - cancelling refresh attempt: org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'storageService': Invocation of init method failed
2024-02-02 16:55:26 Exception in thread "main" org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'storageService': Invocation of init method failed
2024-02-02 16:55:26     at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:196)
2024-02-02 16:55:26     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyBeanPostProcessorsBeforeInitialization(AbstractAutowireCapableBeanFactory.java:419)
2024-02-02 16:55:26     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1762)
2024-02-02 16:55:26     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:598)
2024-02-02 16:55:26     at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:520)
2024-02-02 16:55:26     at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:326)
2024-02-02 16:55:26     at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:234)
2024-02-02 16:55:26     at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:324)
2024-02-02 16:55:26     at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:200)
2024-02-02 16:55:26     at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:973)
2024-02-02 16:55:26     at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:941)
2024-02-02 16:55:26     at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:608)
2024-02-02 16:55:26     at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:144)
2024-02-02 16:55:26     at org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:85)
2024-02-02 16:55:26     at com.linkedpipes.etl.storage.Storage.startSpring(Storage.java:87)
2024-02-02 16:55:26     at com.linkedpipes.etl.storage.Storage.run(Storage.java:33)
2024-02-02 16:55:26     at com.linkedpipes.etl.storage.Storage.main(Storage.java:23)
2024-02-02 16:55:26 Caused by: com.linkedpipes.etl.storage.StorageException: Can't read repository info file '/data/lp-etl/storage/repository-info.json'.
2024-02-02 16:55:26     at com.linkedpipes.etl.storage.template.repository.RepositoryInfo.load(RepositoryInfo.java:44)
2024-02-02 16:55:26     at com.linkedpipes.etl.storage.template.repository.TemplateRepositoryFactory.loadRepositoryInfo(TemplateRepositoryFactory.java:86)
2024-02-02 16:55:26     at com.linkedpipes.etl.storage.template.repository.TemplateRepositoryFactory.create(TemplateRepositoryFactory.java:37)
2024-02-02 16:55:26     at com.linkedpipes.etl.storage.StorageService.initializeTemplateRepository(StorageService.java:109)
2024-02-02 16:55:26     at com.linkedpipes.etl.storage.StorageService.initialize(StorageService.java:72)
2024-02-02 16:55:26     at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
2024-02-02 16:55:26     at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77)
2024-02-02 16:55:26     at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
2024-02-02 16:55:26     at java.base/java.lang.reflect.Method.invoke(Method.java:568)
2024-02-02 16:55:26     at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleElement.invoke(InitDestroyAnnotationBeanPostProcessor.java:425)
2024-02-02 16:55:26     at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor$LifecycleMetadata.invokeInitMethods(InitDestroyAnnotationBeanPostProcessor.java:369)
2024-02-02 16:55:26     at org.springframework.beans.factory.annotation.InitDestroyAnnotationBeanPostProcessor.postProcessBeforeInitialization(InitDestroyAnnotationBeanPostProcessor.java:193)
2024-02-02 16:55:26     ... 16 more
2024-02-02 16:55:26 Caused by: com.fasterxml.jackson.databind.exc.MismatchedInputException: No content to map due to end-of-input
2024-02-02 16:55:26  at [Source: (File); line: 1, column: 0]
2024-02-02 16:55:26     at com.fasterxml.jackson.databind.exc.MismatchedInputException.from(MismatchedInputException.java:59)
2024-02-02 16:55:26     at com.fasterxml.jackson.databind.ObjectMapper._initForReading(ObjectMapper.java:4916)
2024-02-02 16:55:26     at com.fasterxml.jackson.databind.ObjectMapper._readMapAndClose(ObjectMapper.java:4818)
2024-02-02 16:55:26     at com.fasterxml.jackson.databind.ObjectMapper.readValue(ObjectMapper.java:3637)
2024-02-02 16:55:26     at com.linkedpipes.etl.storage.template.repository.RepositoryInfo.load(RepositoryInfo.java:42)
2024-02-02 16:55:26     ... 27 more

Is there something I'm missing/doing wrong here?
@skodapetr skodapetr self-assigned this Feb 7, 2024
@skodapetr
Copy link
Member

Dear @Pin0 thank you for your report. To be sure, you just run following locally?

git clone https://github.com/linkedpipes/etl.git
cd etl
docker compose up

@Pin0
Copy link
Author

Pin0 commented Feb 9, 2024

Yep, thats exactly what I did.

@jakubklimek
Copy link
Member

@Pin0 can you describe your system where you are trying this?
I just tried and works for me on:

Windows 11
Docker Desktop 4.27.1 (136059)

PS C:\Users\Kuba> git clone https://github.com/linkedpipes/etl.git
Cloning into 'etl'...
remote: Enumerating objects: 57363, done.
remote: Counting objects: 100% (8509/8509), done.
remote: Compressing objects: 100% (3542/3542), done.
remote: Total 57363 (delta 2637), reused 8204 (delta 2421), pack-reused 48854
Receiving objects: 100% (57363/57363), 21.17 MiB | 3.16 MiB/s, done.
Resolving deltas: 100% (21096/21096), done.
Updating files: 100% (2584/2584), done.
PS C:\Users\Kuba> cd .\eclipse-workspace\
PS C:\Users\Kuba\eclipse-workspace> cd ..
PS C:\Users\Kuba> cd etl
PS C:\Users\Kuba\etl> docker compose up
[+] Running 33/14
 ✔ executor 10 layers [⣿⣿⣿⣿⣿⣿⣿⣿⣿⣿]      0B/0B      Pulled                                                         24.0s
 ✔ storage 4 layers [⣿⣿⣿⣿]      0B/0B      Pulled                                                                 22.2s
 ✔ frontend 12 layers [⣿⣿⣿⣿⣿⣿⣿⣿⣿⣿⣿⣿]      0B/0B      Pulled                                                       63.6s
 ✔ executor-monitor 3 layers [⣿⣿⣿]      0B/0B      Pulled                                                         22.9s

[+] Running 9/9
 ✔ Network etl_default               Created                                                                       0.1s
 ✔ Volume "etl_data-logs"            Created                                                                       0.1s
 ✔ Volume "etl_configuration"        Created                                                                       0.1s
 ✔ Volume "etl_data-storage"         Created                                                                       0.0s
 ✔ Volume "etl_data-execution"       Created                                                                       0.1s
 ✔ Container etl-executor-monitor-1  Created                                                                       0.9s
 ✔ Container etl-executor-1          Created                                                                       0.9s
 ✔ Container etl-storage-1           Created                                                                       0.9s
 ✔ Container etl-frontend-1          Created                                                                       0.9s
Attaching to executor-1, executor-monitor-1, frontend-1, storage-1
executor-1          | 12:30:27,447 [main           ] DEBUG com.linkedpipes.etl.executor.cli.ConfigurationLoader
- Reading configuration from: /opt/lp-etl/configuration/configuration.properties
executor-1          | 12:30:27,480 [main           ] WARN  com.linkedpipes.etl.executor.cli.ConfigurationLoader
- Properties configuration files are deprecated.
executor-1          | 12:30:27,652 [main           ] DEBUG com.linkedpipes.etl.executor.Executor
- Banned components: []
storage-1           | 12:30:27,679 [main           ] DEBUG com.linkedpipes.etl.storage.cli.ConfigurationLoader
- Reading configuration from: /opt/lp-etl/configuration/configuration.properties
storage-1           | 12:30:27,684 [main           ] WARN  com.linkedpipes.etl.storage.cli.ConfigurationLoader
- Properties configuration files are deprecated.
frontend-1          |
frontend-1          | > linkedpipes-etl@1.0.0 start
frontend-1          | > node server/server.production.js
frontend-1          |
executor-monitor-1  | 12:30:28,097 [main           ] DEBUG com.linkedpipes.etl.executor.monitor.cli.ConfigurationLoader - Reading configuration from: /opt/lp-etl/configuration/configuration.properties
executor-monitor-1  | 12:30:28,106 [main           ] WARN  com.linkedpipes.etl.executor.monitor.cli.ConfigurationLoader - Properties configuration files are deprecated.
frontend-1          | Loading configuration from:  /opt/lp-etl/configuration/configuration.properties
frontend-1          | 2024-02-09 12:30:28 [INFO] Starting production server ...
frontend-1          | 2024-02-09 12:30:28 [INFO] Listening on port: 8080
storage-1           | 12:30:29,335 [main           ] DEBUG com.linkedpipes.etl.storage.plugin.JavaPluginService
- Loading plugins ...
executor-monitor-1  | 12:30:29,643 [main           ] INFO  com.linkedpipes.etl.executor.monitor.events.EventListenerAggregator - Initializing event listeners ...
executor-monitor-1  | 12:30:30,805 [main           ] INFO  com.linkedpipes.etl.executor.monitor.web.WebServer
- Starting web server on port: 8081
executor-1          | 12:30:30,870 [main           ] DEBUG com.linkedpipes.etl.executor.plugin.osgi.OsgiPluginService   - Loading libraries from '/opt/lp-etl/osgi'.
executor-monitor-1  | 12:30:31,213 [main           ] INFO  org.eclipse.jetty.server.Server
- jetty-11.0.15; built: 2023-04-11T18:37:53.775Z; git: 5bc5e562c8d05c5862505aebe5cf83a61bdbcb96; jvm 17.0.1+12-39
executor-monitor-1  | 12:30:31,337 [main           ] INFO  org.eclipse.jetty.server.handler.ContextHandler.ROOT
- Initializing Spring root WebApplicationContext
storage-1           | 12:30:31,584 [main           ] INFO  com.linkedpipes.etl.storage.plugin.JavaPluginService
- Loading plugins ... done with 97 plugins
storage-1           | 12:30:31,604 [main           ] DEBUG com.linkedpipes.etl.storage.template.repository.file.FileTemplateRepository - Loading repository ...
storage-1           | 12:30:31,620 [main           ] DEBUG com.linkedpipes.etl.storage.template.repository.file.FileTemplateRepository - Loading repository ... done
storage-1           | 12:30:31,758 [main           ] DEBUG com.linkedpipes.etl.storage.template.PluginTemplateService   - Initializing plugin service ...
storage-1           | 12:30:31,759 [main           ] INFO  com.linkedpipes.etl.storage.template.PluginTemplateService   - Initializing plugin service ... done with 98 templates
storage-1           | 12:30:31,759 [main           ] DEBUG com.linkedpipes.etl.storage.template.ReferenceTemplateService - Initializing reference service ...
storage-1           | 12:30:31,759 [main           ] INFO  com.linkedpipes.etl.storage.template.ReferenceTemplateService - Initializing reference service ... done with 0 templates
storage-1           | 12:30:31,762 [main           ] DEBUG com.linkedpipes.etl.storage.pipeline.repository.file.FilePipelineRepository - Loading repository ...
storage-1           | 12:30:31,763 [main           ] DEBUG com.linkedpipes.etl.storage.pipeline.repository.file.FilePipelineRepository - Loading repository ... done (files: 0, loaded: 0, migrated: 0, failed: 0)
storage-1           | 12:30:31,763 [main           ] DEBUG com.linkedpipes.etl.storage.pipeline.PipelineService
- Initializing pipeline service ...
storage-1           | 12:30:31,764 [main           ] INFO  com.linkedpipes.etl.storage.pipeline.PipelineService
- Initializing pipeline service ... done with 0 pipelines
storage-1           | 12:30:31,764 [main           ] DEBUG com.linkedpipes.etl.storage.StorageService
- Initialization done in 2s
storage-1           | 12:30:31,912 [main           ] INFO  com.linkedpipes.etl.storage.http.HttpServer
- Starting HTTP server on port 8083
storage-1           | 12:30:32,399 [main           ] INFO  org.eclipse.jetty.server.Server
- jetty-11.0.15; built: 2023-04-11T18:37:53.775Z; git: 5bc5e562c8d05c5862505aebe5cf83a61bdbcb96; jvm 17.0.1+12-39
storage-1           | 12:30:32,592 [main           ] INFO  org.eclipse.jetty.server.handler.ContextHandler.ROOT
- Initializing Spring root WebApplicationContext
executor-monitor-1  | 12:30:32,846 [main           ] INFO  org.eclipse.jetty.server.handler.ContextHandler.ROOT
- Initializing Spring DispatcherServlet 'org.springframework.web.servlet.DispatcherServlet-3703bf3c'
executor-monitor-1  | 12:30:32,890 [main           ] INFO  org.eclipse.jetty.server.handler.ContextHandler
- Started o.e.j.s.ServletContextHandler@71978f46{/,jar:file:/opt/lp-etl/executor-monitor/executor-monitor.jar!/web/,AVAILABLE}
executor-monitor-1  | 12:30:32,921 [main           ] INFO  org.eclipse.jetty.server.AbstractConnector
- Started ServerConnector@30404dba{HTTP/1.1, (http/1.1)}{0.0.0.0:8081}
executor-monitor-1  | 12:30:32,944 [main           ] INFO  org.eclipse.jetty.server.Server
- Started Server@51ec2df1{STARTING}[11.0.15,sto=0] @6377ms
executor-monitor-1  | 12:30:32,945 [main           ] INFO  com.linkedpipes.etl.executor.monitor.web.FtpServer
- Starting FTP server on ports: 2221, 2222 - 2225
executor-1          | 12:30:33,038 [main           ] DEBUG org.apache.jena.util.FileManager
- Add location: LocatorFile
executor-1          | 12:30:33,039 [main           ] DEBUG org.apache.jena.util.FileManager
- Add location: ClassLoaderLocator
executor-1          | 12:30:33,040 [main           ] DEBUG org.apache.jena.util.LocationMapper
- Failed to find configuration: file:location-mapping.rdf;file:location-mapping.n3;file:location-mapping.ttl;file:etc/location-mapping.rdf;file:etc/location-mapping.n3;file:etc/location-mapping.ttl
executor-1          | 12:30:33,041 [main           ] DEBUG org.apache.jena.util.FileManager
- Add location: LocatorFile
executor-1          | 12:30:33,041 [main           ] DEBUG org.apache.jena.util.FileManager
- Add location: LocatorURL
executor-1          | 12:30:33,041 [main           ] DEBUG org.apache.jena.util.FileManager
- Add location: ClassLoaderLocator
executor-1          | 12:30:33,054 [main           ] DEBUG org.apache.jena.riot.system.stream.JenaIOEnvironment
- Failed to find configuration: location-mapping.ttl;location-mapping.rdf;etc/location-mapping.rdf;etc/location-mapping.ttl
executor-monitor-1  | 12:30:33,098 [main           ] DEBUG org.apache.ftpserver.impl.DefaultFtpServerContext
- Intializing shared thread pool executor with max threads of 4
executor-monitor-1  | 12:30:33,151 [main           ] INFO  org.apache.ftpserver.impl.DefaultFtpServer
- FTP server started
executor-1          | 12:30:33,597 [main           ] DEBUG org.apache.jena.info
- System architecture: 64 bit
executor-1          | 12:30:33,633 [main           ] DEBUG org.apache.jena.dboe.System
- System architecture: 64 bit
executor-1          | 12:30:33,757 [main           ] DEBUG com.linkedpipes.etl.executor.plugin.osgi.OsgiPluginService   - Loading plugins from '/opt/lp-etl/components'.
storage-1           | 12:30:33,831 [main           ] INFO  org.eclipse.jetty.server.handler.ContextHandler.ROOT
- Initializing Spring DispatcherServlet 'org.springframework.web.servlet.DispatcherServlet-73ab3aac'
storage-1           | 12:30:33,859 [main           ] INFO  org.eclipse.jetty.server.handler.ContextHandler
- Started o.e.j.s.ServletContextHandler@3c98781a{/,jar:file:/opt/lp-etl/storage/storage.jar!/web/,AVAILABLE}
storage-1           | 12:30:33,882 [main           ] INFO  org.eclipse.jetty.server.AbstractConnector
- Started ServerConnector@29a4f594{HTTP/1.1, (http/1.1)}{0.0.0.0:8083}
storage-1           | 12:30:33,889 [main           ] INFO  org.eclipse.jetty.server.Server
- Started Server@1e54cb33{STARTING}[11.0.15,sto=0] @7499ms
executor-1          | 12:30:34,409 [main           ] WARN  com.linkedpipes.etl.executor.plugin.osgi.OsgiClassLoader     - Can't load class: com.linkedpipes.plugin.loader.wikibase.WikibaseApiConnection
executor-1          | java.lang.NoClassDefFoundError: org/wikidata/wdtk/wikibaseapi/BasicApiConnection
executor-1          |   at java.base/java.lang.ClassLoader.defineClass1(Native Method)
executor-1          |   at java.base/java.lang.ClassLoader.defineClass(ClassLoader.java:1012)
executor-1          |   at org.eclipse.osgi.internal.loader.ModuleClassLoader.defineClass(ModuleClassLoader.java:276)
executor-1          |   at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.defineClass(ClasspathManager.java:632)
executor-1          |   at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findClassImpl(ClasspathManager.java:555)
executor-1          |   at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClassImpl(ClasspathManager.java:514)
executor-1          |   at org.eclipse.osgi.internal.loader.classpath.ClasspathManager.findLocalClass(ClasspathManager.java:501)
executor-1          |   at org.eclipse.osgi.internal.loader.ModuleClassLoader.findLocalClass(ModuleClassLoader.java:328)
executor-1          |   at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:392)
executor-1          |   at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:470)
executor-1          |   at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:419)
executor-1          |   at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:411)
executor-1          |   at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150)
executor-1          |   at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:520)
executor-1          |   at org.eclipse.osgi.internal.framework.EquinoxBundle.loadClass(EquinoxBundle.java:609)
executor-1          |   at com.linkedpipes.etl.executor.plugin.osgi.OsgiClassLoader.tryToLoadAndRegisterClass(OsgiClassLoader.java:84)
executor-1          |   at com.linkedpipes.etl.executor.plugin.osgi.OsgiClassLoader.scan(OsgiClassLoader.java:59)
executor-1          |   at com.linkedpipes.etl.executor.plugin.osgi.OsgiClassLoader.load(OsgiClassLoader.java:42)
executor-1          |   at com.linkedpipes.etl.executor.plugin.osgi.OsgiPluginService.loadPlugin(OsgiPluginService.java:174)
executor-1          |   at com.linkedpipes.etl.executor.plugin.osgi.OsgiPluginService.loadPlugins(OsgiPluginService.java:148)
executor-1          |   at com.linkedpipes.etl.executor.plugin.PluginServiceHolder.start(PluginServiceHolder.java:133)
executor-1          |   at com.linkedpipes.etl.executor.plugin.PluginServiceHolder.onApplicationEvent(PluginServiceHolder.java:119)
executor-1          |   at org.springframework.context.event.SimpleApplicationEventMulticaster.doInvokeListener(SimpleApplicationEventMulticaster.java:172)
executor-1          |   at org.springframework.context.event.SimpleApplicationEventMulticaster.invokeListener(SimpleApplicationEventMulticaster.java:165)
executor-1          |   at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:143)
executor-1          |   at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:437)
executor-1          |   at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:370)
executor-1          |   at org.springframework.context.support.AbstractApplicationContext.start(AbstractApplicationContext.java:1443)
executor-1          |   at com.linkedpipes.etl.executor.Executor.startSpring(Executor.java:97)
executor-1          |   at com.linkedpipes.etl.executor.Executor.run(Executor.java:35)
executor-1          |   at com.linkedpipes.etl.executor.Executor.main(Executor.java:23)
executor-1          | Caused by: java.lang.ClassNotFoundException: org.wikidata.wdtk.wikibaseapi.BasicApiConnection cannot be found by com.linkedpipes.l-wikibase_0.0.0
executor-1          |   at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:508)
executor-1          |   at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:419)
executor-1          |   at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:411)
executor-1          |   at org.eclipse.osgi.internal.loader.ModuleClassLoader.loadClass(ModuleClassLoader.java:150)
executor-1          |   at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:520)
executor-1          |   ... 31 common frames omitted
executor-1          | 12:30:37,529 [main           ] INFO  com.linkedpipes.etl.executor.plugin.osgi.OsgiPluginService   - Loaded '98' component bundles from '97' files.
executor-1          | 12:30:37,529 [main           ] INFO  com.linkedpipes.etl.executor.web.WebServer
- Starting server on port: 8085
executor-1          | 12:30:37,765 [main           ] INFO  org.eclipse.jetty.server.Server
- jetty-11.0.15; built: 2023-04-11T18:37:53.775Z; git: 5bc5e562c8d05c5862505aebe5cf83a61bdbcb96; jvm 17.0.1+12-39
executor-1          | 12:30:37,886 [main           ] INFO  org.eclipse.jetty.server.handler.ContextHandler.ROOT
- Initializing Spring root WebApplicationContext
executor-1          | 12:30:38,899 [main           ] INFO  org.eclipse.jetty.server.handler.ContextHandler.ROOT
- Initializing Spring DispatcherServlet 'org.springframework.web.servlet.DispatcherServlet-5f166f2e'
executor-1          | 12:30:38,916 [main           ] INFO  org.eclipse.jetty.server.handler.ContextHandler
- Started o.e.j.s.ServletContextHandler@1a7a21d0{/,jar:file:/opt/lp-etl/executor/executor.jar!/web/,AVAILABLE}
executor-1          | 12:30:38,944 [main           ] INFO  org.eclipse.jetty.server.AbstractConnector
- Started ServerConnector@2430cf17{HTTP/1.1, (http/1.1)}{0.0.0.0:8085}
executor-1          | 12:30:38,967 [main           ] INFO  org.eclipse.jetty.server.Server
- Started Server@6d6f6ca9{STARTING}[11.0.15,sto=0] @12741ms

@Pin0
Copy link
Author

Pin0 commented Feb 9, 2024

Docker version 24.0.6, build ed223bc
Model Name: MacBook Pro
Model Identifier: MacBookPro14,3
Processor Name: Quad-Core Intel Core i7
Processor Speed: 2,8 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Version: macOS 13.6.3 (22G436)
Kernel Version: Darwin 22.6.0

@jakubklimek
Copy link
Member

@Pin0 thanks. Unfortunately, we do not have a Mac to test this on, if it turns out to be a Mac-specific issue.

@skodapetr
Copy link
Member

@Pin0 Can you execute following commands and share the output?

# In the LP:ETL directory, start the storage container.
docker compose run -it storage bash
# In the container, check content and existence of the data directory.
ls -la /data/lp-etl/storage
# Print content of the file
cat /data/lp-etl/storage/repository-info.json
# Exit container
exit

@skodapetr skodapetr removed their assignment Jul 18, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Milestone
No milestone
Development

No branches or pull requests
3 participants
@jakubklimek @skodapetr @Pin0