When using mitoz visualize --depth_file, there is no depth track in the resulting image

[Liuxuanzeng]

Hello Lin,
I'm having some problems using the mitoz visualize --depth_file command, and would like some help.
I run the command is
mitoz visualize --gb xyx_mt_02out_xyx_mt_02out.megahit.mitogenome.fa_mitoscaf.fa.gbf --depth_file xya_depth.txt --outdir xya_test

xya_depth.txt is a file I built myself, as shown here

This two depth_file, I tried input respectively, but the resulting graph did not have the depth track.And the circos.dept.txt file in the result file is blank.


The above is the result image and the result folder. I used MitoZ3.4 and 3.5 respectively to try, and there was no depth track in the image.
I wasn't sure what was wrong and wanted help. Thank you very much!

Liuxuanzeng

[linzhi2013]

Hi Liuxuanzeng,

Could you please try to use the absolute paths to the files?

[Liuxuanzeng]

Hi Lin,
Thank you for your help. I tried to use the absolute path, this problem has been solved. Sorry to trouble you with such a stupid mistake. Thank you very much.

Liuxuanzeng

[linzhi2013]

Hi Liuxuanzeng,

No, I am pleased that you raised the issue, I should have converted the (relative) path of input files into an absolute path in MitoZ. I will fix it at the next release.

Cheers
Guan

[linzhi2013]

Fixed on https://github.com/linzhi2013/MitoZ/releases/tag/3.6