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environment.yml
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environment.yml
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name: anvio
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=4.5=1_gnu
- _r-mutex=1.0.1=anacondar_1
- binutils_impl_linux-64=2.33.1=he6710b0_7
- binutils_linux-64=2.33.1=h9595d00_15
- bioconductor-qvalue=2.18.0=r36_1
- blas=1.0=mkl
- blast=2.9.0=pl526he19e7b1_5
- boost=1.67.0=py36_4
- bwa=0.7.17=hed695b0_7
- bwidget=1.9.11=1
- bzip2=1.0.8=h7b6447c_0
- ca-certificates=2021.5.25=h06a4308_1
- cairo=1.16.0=hf32fb01_1
- centrifuge=1.0.4_beta=py36pl526he941832_2
- certifi=2021.5.30=py36h06a4308_0
- curl=7.69.1=hbc83047_0
- diamond=0.9.24=ha87ae23_0
- entrez-direct=13.9=pl5262he881be0_2
- expat=2.4.1=h2531618_2
- fastani=1.1=h4ef8376_0
- fasttree=2.1.10=h516909a_4
- fontconfig=2.13.1=h6c09931_0
- freetype=2.10.4=h5ab3b9f_0
- fribidi=1.0.10=h7b6447c_0
- gcc_impl_linux-64=7.3.0=habb00fd_1
- gcc_linux-64=7.3.0=h553295d_15
- gfortran_impl_linux-64=7.3.0=hdf63c60_1
- gfortran_linux-64=7.3.0=h553295d_15
- glib=2.68.2=h36276a3_0
- graphite2=1.3.14=h23475e2_0
- gsl=2.4=h14c3975_4
- gxx_impl_linux-64=7.3.0=hdf63c60_1
- gxx_linux-64=7.3.0=h553295d_15
- h5py=2.8.0=py36h31fdc65_1005
- harfbuzz=2.8.1=h6f93f22_0
- hdf5=1.10.4=hb1b8bf9_0
- hmmer=3.2.1=he1b5a44_2
- icu=58.2=he6710b0_3
- infernal=1.1.3=h516909a_0
- intel-openmp=2021.2.0=h06a4308_610
- iqtree=2.1.2=h56fc30b_0
- jpeg=9b=h024ee3a_2
- krb5=1.17.1=h173b8e3_0
- ld_impl_linux-64=2.33.1=h53a641e_7
- libboost=1.67.0=h46d08c1_4
- libcurl=7.69.1=h20c2e04_0
- libdeflate=1.0=h14c3975_1
- libedit=3.1.20210216=h27cfd23_1
- libffi=3.3=he6710b0_2
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=9.3.0=h5101ec6_17
- libgfortran-ng=7.5.0=ha8ba4b0_17
- libgfortran4=7.5.0=ha8ba4b0_17
- libgomp=9.3.0=h5101ec6_17
- libpng=1.6.37=hbc83047_0
- libssh2=1.9.0=h1ba5d50_1
- libstdcxx-ng=9.3.0=hd4cf53a_17
- libtiff=4.2.0=h85742a9_0
- libuuid=1.0.3=h1bed415_2
- libwebp-base=1.2.0=h27cfd23_0
- libxcb=1.14=h7b6447c_0
- libxml2=2.9.10=hb55368b_3
- lz4-c=1.9.3=h2531618_0
- make=4.2.1=h1bed415_1
- mcl=14.137=pl526h516909a_5
- megahit=1.2.9=h8b12597_0
- mkl=2020.2=256
- mkl-service=2.3.0=py36he8ac12f_0
- mkl_fft=1.3.0=py36h54f3939_0
- mkl_random=1.1.1=py36h0573a6f_0
- muscle=3.8.1551=hc9558a2_5
- ncurses=6.2=he6710b0_1
- numpy=1.19.2=py36h54aff64_0
- numpy-base=1.19.2=py36hfa32c7d_0
- openssl=1.1.1k=h27cfd23_0
- pango=1.45.3=hd140c19_0
- pcre=8.44=he6710b0_0
- perl=5.26.2=h14c3975_0
- perl-app-cpanminus=1.7044=pl526_1
- perl-archive-tar=2.32=pl526_0
- perl-base=2.23=pl526_1
- perl-business-isbn=3.004=pl526_0
- perl-business-isbn-data=20140910.003=pl526_0
- perl-carp=1.38=pl526_3
- perl-common-sense=3.74=pl526_2
- perl-compress-raw-bzip2=2.087=pl526he1b5a44_0
- perl-compress-raw-zlib=2.087=pl526hc9558a2_0
- perl-constant=1.33=pl526_1
- perl-data-dumper=2.173=pl526_0
- perl-digest-hmac=1.03=pl526_3
- perl-digest-md5=2.55=pl526_0
- perl-encode=2.88=pl526_1
- perl-encode-locale=1.05=pl526_6
- perl-exporter=5.72=pl526_1
- perl-exporter-tiny=1.002001=pl526_0
- perl-extutils-makemaker=7.36=pl526_1
- perl-file-listing=6.04=pl526_1
- perl-file-path=2.16=pl526_0
- perl-file-temp=0.2304=pl526_2
- perl-html-parser=3.72=pl526h6bb024c_5
- perl-html-tagset=3.20=pl526_3
- perl-html-tree=5.07=pl526_1
- perl-http-cookies=6.04=pl526_0
- perl-http-daemon=6.01=pl526_1
- perl-http-date=6.02=pl526_3
- perl-http-message=6.18=pl526_0
- perl-http-negotiate=6.01=pl526_3
- perl-io-compress=2.087=pl526he1b5a44_0
- perl-io-html=1.001=pl526_2
- perl-io-socket-ssl=2.066=pl526_0
- perl-io-zlib=1.10=pl526_2
- perl-json=4.02=pl526_0
- perl-json-xs=2.34=pl526h6bb024c_3
- perl-libwww-perl=6.39=pl526_0
- perl-list-moreutils=0.428=pl526_1
- perl-list-moreutils-xs=0.428=pl526_0
- perl-lwp-mediatypes=6.04=pl526_0
- perl-lwp-protocol-https=6.07=pl526_4
- perl-mime-base64=3.15=pl526_1
- perl-mozilla-ca=20180117=pl526_1
- perl-net-http=6.19=pl526_0
- perl-net-ssleay=1.88=pl526h90d6eec_0
- perl-ntlm=1.09=pl526_4
- perl-parent=0.236=pl526_1
- perl-pathtools=3.75=pl526h14c3975_1
- perl-scalar-list-utils=1.52=pl526h516909a_0
- perl-socket=2.027=pl526_1
- perl-storable=3.15=pl526h14c3975_0
- perl-test-requiresinternet=0.05=pl526_0
- perl-threaded=5.26.0=0
- perl-time-local=1.28=pl526_1
- perl-try-tiny=0.30=pl526_1
- perl-types-serialiser=1.0=pl526_2
- perl-uri=1.76=pl526_0
- perl-www-robotrules=6.02=pl526_3
- perl-xml-namespacesupport=1.12=pl526_0
- perl-xml-parser=2.44=4
- perl-xml-sax=1.02=pl526_0
- perl-xml-sax-base=1.09=pl526_0
- perl-xml-sax-expat=0.51=pl526_3
- perl-xml-simple=2.25=pl526_1
- perl-xsloader=0.24=pl526_0
- pip=21.1.2=py36h06a4308_0
- pixman=0.40.0=h7b6447c_0
- prodigal=2.6.3=h516909a_2
- py-boost=1.67.0=py36h04863e7_4
- pysam=0.15.3=py36hda2845c_1
- python=3.6.13=hdb3f193_0
- r-askpass=1.0=r36h14c3975_0
- r-assertthat=0.2.1=r36h6115d3f_0
- r-backports=1.1.4=r36h96ca727_0
- r-base=3.6.1=haffb61f_2
- r-base64enc=0.1_3=r36h96ca727_4
- r-bh=1.69.0_1=r36h6115d3f_0
- r-broom=0.5.2=r36h6115d3f_0
- r-callr=3.2.0=r36h6115d3f_0
- r-cellranger=1.1.0=r36h6115d3f_0
- r-cli=1.1.0=r36h6115d3f_0
- r-clipr=0.6.0=r36h6115d3f_0
- r-colorspace=1.4_1=r36h96ca727_0
- r-crayon=1.3.4=r36h6115d3f_0
- r-curl=3.3=r36h96ca727_0
- r-dbi=1.0.0=r36h6115d3f_0
- r-dbplyr=1.4.0=r36h6115d3f_0
- r-dichromat=2.0_0=r36h6115d3f_4
- r-digest=0.6.18=r36h96ca727_0
- r-dplyr=0.8.0.1=r36h29659fb_0
- r-ellipsis=0.1.0=r36h96ca727_0
- r-evaluate=0.13=r36h6115d3f_0
- r-fansi=0.4.0=r36h96ca727_0
- r-forcats=0.4.0=r36h6115d3f_0
- r-fs=1.2.7=r36h29659fb_0
- r-generics=0.0.2=r36h6115d3f_0
- r-getopt=1.20.3=r36h6115d3f_0
- r-ggplot2=3.1.1=r36h6115d3f_0
- r-glue=1.3.1=r36h96ca727_0
- r-gtable=0.3.0=r36h6115d3f_0
- r-gtools=3.8.1=r36h96ca727_0
- r-haven=2.1.0=r36h29659fb_0
- r-highr=0.8=r36h6115d3f_0
- r-hms=0.4.2=r36h6115d3f_0
- r-htmltools=0.3.6=r36h29659fb_0
- r-httr=1.4.0=r36h6115d3f_0
- r-jsonlite=1.6=r36h96ca727_0
- r-knitr=1.22=r36h6115d3f_0
- r-labeling=0.3=r36h6115d3f_4
- r-lattice=0.20_38=r36h96ca727_0
- r-lazyeval=0.2.2=r36h96ca727_0
- r-lubridate=1.7.4=r36h29659fb_0
- r-magrittr=1.5=r36h6115d3f_4
- r-markdown=0.9=r36h96ca727_0
- r-mass=7.3_51.3=r36h96ca727_0
- r-matrix=1.2_17=r36h96ca727_0
- r-mgcv=1.8_28=r36h96ca727_0
- r-mime=0.6=r36h96ca727_0
- r-modelr=0.1.4=r36h6115d3f_0
- r-munsell=0.5.0=r36h6115d3f_0
- r-nlme=3.1_139=r36ha65eedd_0
- r-openssl=1.3=r36h96ca727_0
- r-optparse=1.6.2=r36h6115d3f_0
- r-pillar=1.3.1=r36h6115d3f_0
- r-pkgconfig=2.0.2=r36h6115d3f_0
- r-plogr=0.2.0=r36h6115d3f_0
- r-plyr=1.8.4=r36h29659fb_0
- r-prettyunits=1.0.2=r36h6115d3f_0
- r-processx=3.3.0=r36h96ca727_0
- r-progress=1.2.0=r36h6115d3f_0
- r-ps=1.3.0=r36h96ca727_0
- r-purrr=0.3.2=r36h96ca727_0
- r-r6=2.4.0=r36h6115d3f_0
- r-rcolorbrewer=1.1_2=r36h6115d3f_0
- r-rcpp=1.0.1=r36h29659fb_0
- r-readr=1.3.1=r36h29659fb_0
- r-readxl=1.3.1=r36h29659fb_0
- r-rematch=1.0.1=r36h6115d3f_0
- r-reprex=0.2.1=r36h6115d3f_0
- r-reshape2=1.4.3=r36h29659fb_0
- r-rlang=0.3.4=r36h96ca727_0
- r-rmarkdown=1.12=r36h6115d3f_0
- r-rstudioapi=0.10=r36h6115d3f_0
- r-rvest=0.3.3=r36h6115d3f_0
- r-scales=1.0.0=r36h29659fb_0
- r-selectr=0.4_1=r36h6115d3f_0
- r-stringi=1.4.3=r36h29659fb_0
- r-stringr=1.4.0=r36h6115d3f_0
- r-sys=3.2=r36h96ca727_0
- r-tibble=2.1.1=r36h96ca727_0
- r-tidyr=0.8.3=r36h29659fb_0
- r-tidyselect=0.2.5=r36h29659fb_0
- r-tidyverse=1.2.1=r36h6115d3f_0
- r-tinytex=0.12=r36h6115d3f_0
- r-utf8=1.1.4=r36h96ca727_0
- r-viridislite=0.3.0=r36h6115d3f_0
- r-whisker=0.3_2=r36h6115d3f_4
- r-withr=2.1.2=r36h6115d3f_0
- r-xfun=0.6=r36h6115d3f_0
- r-xml2=1.2.0=r36h29659fb_0
- r-yaml=2.2.0=r36h96ca727_0
- readline=8.1=h27cfd23_0
- setuptools=52.0.0=py36h06a4308_0
- six=1.16.0=pyhd3eb1b0_0
- spades=3.13.1=0
- sqlite=3.35.4=hdfb4753_0
- tk=8.6.10=hbc83047_0
- tktable=2.10=h14c3975_0
- trimal=1.4.1=hc9558a2_4
- trnascan-se=2.0.7=pl526h516909a_0
- wheel=0.36.2=pyhd3eb1b0_0
- xz=5.2.5=h7b6447c_0
- zlib=1.2.11=h7b6447c_3
- zstd=1.4.9=haebb681_0
- pip:
- anvio==7
- appdirs==1.4.4
- asgiref==3.3.4
- attrs==21.2.0
- beautifulsoup4==4.9.3
- biopython==1.78
- bottle==0.12.19
- chardet==4.0.0
- colored==1.4.2
- configargparse==1.4.1
- cycler==0.10.0
- datrie==0.8.2
- decorator==5.0.9
- django==3.2.3
- docutils==0.17.1
- ete3==3.1.2
- gitdb==4.0.7
- gitpython==3.1.17
- idna==2.10
- illumina-utils==2.11
- importlib-metadata==4.4.0
- ipython-genutils==0.2.0
- joblib==1.0.1
- jsonschema==3.2.0
- jupyter-core==4.7.1
- kiwisolver==1.3.1
- llvmlite==0.36.0
- matplotlib==3.3.4
- mistune==0.8.4
- nbformat==5.1.3
- ncbi-genome-download==0.3.0
- numba==0.53.1
- pandas==0.25.1
- paste==3.5.0
- patsy==0.5.1
- pillow==8.2.0
- psutil==5.4.3
- pyani==0.2.10
- pyparsing==2.4.7
- pyrsistent==0.17.3
- python-dateutil==2.8.1
- python-levenshtein==0.12.2
- pytz==2021.1
- pyyaml==5.4.1
- ratelimiter==1.2.0.post0
- requests==2.25.1
- scikit-learn==0.24.2
- scipy==1.5.4
- seaborn==0.11.1
- smmap==4.0.0
- snakemake==5.10.0
- sqlparse==0.4.1
- statsmodels==0.12.2
- tabulate==0.8.9
- threadpoolctl==2.1.0
- toposort==1.6
- traitlets==4.3.3
- typing-extensions==3.10.0.0
- urllib3==1.26.5
- wrapt==1.12.1
- zipp==3.4.1