Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

min_motif problem #3

Open
chenzhiw opened this issue May 14, 2024 · 0 comments
Open

min_motif problem #3

chenzhiw opened this issue May 14, 2024 · 0 comments

Comments

@chenzhiw
Copy link 

>>> import pytrf
>>> name = "test"
>>> seq = "GTAC" * 6
>>> print(pytrf.GTRFinder(name, seq, min_motif=4).as_list())
[]
>>> print(pytrf.GTRFinder(name, seq, min_motif=3).as_list())
[('test', 1, 24, 'GTAC', 4, 6, 24)]

The repeat motif is "GTAC", and its length is 4. Why doesn't setting min_motif=4 work?
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@chenzhiw