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doc_builtinmodels_nistgauss.py
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doc_builtinmodels_nistgauss.py
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# <examples/doc_builtinmodels_nistgauss.py>
import matplotlib.pyplot as plt
import numpy as np
from lmfit.models import ExponentialModel, GaussianModel
dat = np.loadtxt('NIST_Gauss2.dat')
x = dat[:, 1]
y = dat[:, 0]
exp_mod = ExponentialModel(prefix='exp_')
pars = exp_mod.guess(y, x=x)
gauss1 = GaussianModel(prefix='g1_')
pars.update(gauss1.make_params())
pars['g1_center'].set(value=105, min=75, max=125)
pars['g1_sigma'].set(value=15, min=3)
pars['g1_amplitude'].set(value=2000, min=10)
gauss2 = GaussianModel(prefix='g2_')
pars.update(gauss2.make_params())
pars['g2_center'].set(value=155, min=125, max=175)
pars['g2_sigma'].set(value=15, min=3)
pars['g2_amplitude'].set(value=2000, min=10)
mod = gauss1 + gauss2 + exp_mod
init = mod.eval(pars, x=x)
out = mod.fit(y, pars, x=x)
print(out.fit_report(min_correl=0.5))
fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8))
axes[0].plot(x, y, 'b')
axes[0].plot(x, init, 'k--', label='initial fit')
axes[0].plot(x, out.best_fit, 'r-', label='best fit')
axes[0].legend(loc='best')
comps = out.eval_components(x=x)
axes[1].plot(x, y, 'b')
axes[1].plot(x, comps['g1_'], 'g--', label='Gaussian component 1')
axes[1].plot(x, comps['g2_'], 'm--', label='Gaussian component 2')
axes[1].plot(x, comps['exp_'], 'k--', label='Exponential component')
axes[1].legend(loc='best')
plt.show()
# <end examples/doc_builtinmodels_nistgauss.py>