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Finch Movement Tracking Package

Nhat Le, Summer 2017

This repository contains: (1) The code for my MATLAB program used for simple tracking of finches based on color and contrast.

(2) Jupyter notebooks used for data analysis of finch activity levels, using the output from the MATLAB program.

Index

A. Acquisition files:

These MATLAB files are found in the WebcamGUI folder.

Instructions for use can be found here

B. Analysis files:

  1. Raw data analysis for individual animals

  2. Batch analysis for comparison across animals

The notebooks contain extensive guidance on usage.

License

This material is released under an MIT license and thus you are free to re-use, modify, build-on, and enhance this material for any purpose.

If you do use this material, any citation or attribution would be greatly appreciated.

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