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Welcome to the MedPy wiki!

MedPy is a medical image processing library developed in Python. It provides a number of standard low-level image manipulation routines, such as loading, saving, meta-data manipulation and re-slicing. Additionally, some advanged image processing methods are implemented, such as graph cuts, image filtering, gradient compuation and image intensity stadardization.

The most popular methods come wrapped in command-line scripts for direct usage.

In this wiki, you will find instruction on how to install the library, basic tutorials of its functionalities and information on how to contribute.

[Link-name2](#Installing MedPy)

!TODO: Update this list with the scripts contained in version 0.2.1.

Installing MedPy

Installing MedPy from PyPI (Ubuntu)
Installing MedPy from source (Ubuntu)
Uninstalling MedPy (Ubuntu)

Using MedPy as a library

Loading and saving images
Basic image manipulation
Some filter examples (to-come)
List of all functionalities (to-come)
List of supported image formats

Using the MedPy scripts

Basic usage of the MedPy scripts (to-come)
List of all MedPy scripts

3rd party packages

Dependencies (to-come)
Recommendations (to-come)
Optional packages (to-come)

Manuals

Image pre-processing with MedPy (to-come)
Graph cuts with MedPy (to-come)
Machine learning with MedPy and scikit-learn (to-come)
The ITK Python bindings (to-come)

MedPy and ITK

Why ITK with Python bindings? (to-come)
Using the Ubuntu package (to-come)
Compiling ITK with Python bindings (to-come)

Developing with MedPy

Installing MedPy in development mode (Ubuntu)

Contributing to MedPy

(yet-to-come)

MedPy API

(yet-to-come)