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input_run
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input_run
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# Documentation https://lorenzo-rovigatti.github.io/oxDNA/input.html
##############################
#### PROGRAM PARAMETERS ####
##############################
sim_type = MD
backend = CUDA
backend_precision = mixed
use_edge = 1
edge_n_forces = 1
CUDA_list = verlet
CUDA_sort_every = 0
verlet_skin = 0.5
#max_density_multiplier = 10
#debug = 1
##############################
#### SIM PARAMETERS ####
##############################
interaction_type=DNA2
steps = 1e9
dt = 0.003
ensemble = nvt
T = 20C
salt_concentration=1.0
thermostat = brownian
newtonian_steps = 103
diff_coeff = 2.5
external_forces = 0
#exernal_forces_file = external_forces.txt
use_average_seq = 1
#seq_dep_file = /home/erik/software/oxDNA/oxDNA2_sequence_dependent_parameters.txt
##############################
#### INPUT / OUTPUT ####
##############################
topology = topology.top
conf_file = last_conf_MD.dat
lastconf_file = last_conf.dat
trajectory_file = trajectory.dat
energy_file = energy.dat
print_conf_interval = ${$(steps) / 2000}
print_energy_every = ${$(steps) / 10000}
time_scale = linear
refresh_vel = 1
restart_step_counter = 1
no_stdout_energy = 0
#log_file = log_trap.dat