SP025_Analysis

Code and plot for the Project SP025

Name		Name	Last commit message	Last commit date
Latest commit History 60 Commits
CD8		CD8
CD8_reclustering		CD8_reclustering
.DS_Store		.DS_Store
Caushi_CD8_tumor_MPR_Vs_nonMPR_signature.txt		Caushi_CD8_tumor_MPR_Vs_nonMPR_signature.txt
Fairfax_signature.txt		Fairfax_signature.txt
Luoma_Blood_CD8_signature.txt		Luoma_Blood_CD8_signature.txt
Luoma_Tumor_CD8_signature.txt		Luoma_Tumor_CD8_signature.txt
Part0_Lib1_Mouse4QC.ipynb		Part0_Lib1_Mouse4QC.ipynb
Part0_Lib2_Mouse25QC.ipynb		Part0_Lib2_Mouse25QC.ipynb
Part0_Lib3_Mouse5QC.ipynb		Part0_Lib3_Mouse5QC.ipynb
Part0_Lib4_Mouse32QC.ipynb		Part0_Lib4_Mouse32QC.ipynb
Part1_Cluster_preparation_regressed.ipynb		Part1_Cluster_preparation_regressed.ipynb
Part2_DESC_integration.ipynb		Part2_DESC_integration.ipynb
Part3_Clustering_MainTypeFiltering.ipynb		Part3_Clustering_MainTypeFiltering.ipynb
Preparazione_dati_Marco.ipynb		Preparazione_dati_Marco.ipynb
README.md		README.md
Res05_Clusters_DEGS.xlsx		Res05_Clusters_DEGS.xlsx
Res05_Clusters_DEGS_Treatment.xlsx		Res05_Clusters_DEGS_Treatment.xlsx
raw_data_FIG5_J.txt		raw_data_FIG5_J.txt
script_Figure_3.R		script_Figure_3.R
script_Figure_4D.R		script_Figure_4D.R
script_bulk_ATAC.R		script_bulk_ATAC.R
volcano_plot_cd8.py		volcano_plot_cd8.py

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