This repository reproduces the research presented in the paper: "Two-way Sparse Network Inference for Count Data", Authors: Li, Sijia; López-García, Martín; Lawrence, Neil D; Cutillo, Luisa, accepted at AISTATS2022.
We are using Matlab 2020b. You will need to install the following matlab libraries: ndlutil, rca, glmnet_matlab, L1General. Copies of these are included in this repo. You will also need the library of Teralasso (Greenewald et al. 2019) for some comparison studies.
Example on synthetic data: run_synthetic_data.m
Example on real data: main_genes.m
The experiment was run on Intel(R) Core(TM) i5-9500, Windows 10. Please let us know if you encounter any problems either on Windows or other operating system.
- run Figure1.m.
- run run_syntheticGaussian_Three_method_time.m.
- run run_synthetic_data.m.
- run run_synthetic_data_three_blocks.m.
- run main_genes.m.
- run main.R.