Merge pull request #35 from lukapecnik/conda

Conda support

.github/workflows/publish_conda.yml

@@ -0,0 +1,17 @@
+name: publish_conda
+
+on:
+  release:
+    types: [published]
+
+jobs:
+  publish:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v2
+    - name: publish-to-conda
+      uses: fcakyon/conda-publish-action@v1.3
+      with:
+        subdir: 'conda'
+        anacondatoken: ${{ secrets.ANACONDA_TOKEN }}
+        platforms: 'win osx linux'

CONTRIBUTING.md

@@ -7,15 +7,15 @@ This project and everyone participating in it is governed by the [NiaAML Code of
 ## How Can I Contribute?
 
 ### Reporting Bugs
-Before creating bug reports, please check existing issues list as you might find out that you don't need to create one. When you are creating a bug report, please include as many details as possible in the [issue template](ISSUE_TEMPLATE.md).
+Before creating bug reports, please check existing issues list as you might find out that you don't need to create one. When you are creating a bug report, please include as many details as possible in the [issue template](.github/templates/ISSUE_TEMPLATE.md).
 
 ### Suggesting Enhancements
 
-Open new issue using the [feature request template](FEATURE_REQUEST.md).
+Open new issue using the [feature request template](.github/templates/FEATURE_REQUEST.md).
 
 ### Pull requests
 
-Fill in the [pull request template](PULL_REQUEST.md) and make sure your code is documented.
+Fill in the [pull request template](.github/templates/PULL_REQUEST.md) and make sure your code is documented.
 
 ## Setup development environment
 

README.md

@@ -24,6 +24,8 @@ The NiaAML framework allows you not only to run full pipeline optimization, but
 
 ## Installation
 
+### pip
+
 Install NiaAML with pip:
 
 ```sh
@@ -36,6 +38,24 @@ In case you would like to try out the latest pre-release version of the framewor
 pip install niaaml --pre
 ```
 
+### conda
+
+To install NiaAML with conda, use:
+
+```sh
+$ conda install -c lukapecnik niaaml
+```
+
+### Install From Source
+
+In case you want to install directly from the source code, use:
+
+```sh
+$ git clone https://github.com/lukapecnik/NiaAML.git
+$ cd NiaAML
+$ python setup.py install
+```
+
 ## Graphical User Interface
 
 There is a simple Graphical User Interface for the NiaAML package available [here](https://github.com/lukapecnik/NiaAML-GUI).

README.rst

@@ -37,6 +37,9 @@ The NiaAML framework allows you not only to run full pipeline optimization, but
 Installation
 ------------
 
+pip
+~~~
+
 Install NiaAML with pip:
 
 .. code:: sh
@@ -49,6 +52,26 @@ In case you would like to try out the latest pre-release version of the framewor
 
     pip install niaaml --pre
 
+conda
+~~~~~
+
+To install NiaAML with conda, use:
+
+.. code:: sh
+
+    conda install -c lukapecnik niaaml
+
+Install From Source
+~~~~~~~~~~~~~~~~~~~
+
+In case you want to install directly from the source code, use:
+
+.. code:: sh
+
+    git clone https://github.com/lukapecnik/NiaAML.git
+    cd NiaAML
+    python setup.py install
+
 Graphical User Interface
 ------------------------
 

conda/conda_build_config.yaml

@@ -0,0 +1,4 @@
+python:
+  - 3.6
+  - 3.7
+  - 3.8

conda/meta.yaml

@@ -0,0 +1,36 @@
+{% set data = load_setup_py_data() %}
+
+package:
+  name: niaaml
+  version: {{ data['version'] }}
+
+source:
+  path: ..
+
+build:
+  number: 0
+  script: python setup.py install --single-version-externally-managed --record=record.txt
+
+requirements:
+  build:
+    - python>=3.6.1
+    - numpy>=1.19.1
+    - scikit-learn>=0.23.2
+    - NiaPy>=2.0.0rc11
+    - pandas>=1.1.4
+
+  run:
+    - python>=3.6.1
+    - numpy>=1.19.1
+    - scikit-learn>=0.23.2
+    - NiaPy>=2.0.0rc11
+    - pandas>=1.1.4
+
+test:
+  imports:
+    - niaaml
+
+about:
+  home: {{ data['url'] }}
+  license: {{ data['license'] }}
+summary: {{ data['description'] }}

niaaml/__init__.py

@@ -27,4 +27,4 @@
 ]
 
 __project__ = 'niaaml'
-__version__ = '1.0.0rc4'
+__version__ = '1.0.0rc5'

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "NiaAML"
-version = "1.0.0rc4"
+version = "1.0.0rc5"
 description = "Python automated machine learning framework."
 license = "MIT"
 authors = ["Luka Pečnik <lukapecnik96@gmail.com>", "Iztok Fister Jr. <iztok.fister1@um.si>"]

setup.py

@@ -0,0 +1,86 @@
+#!/usr/bin/env python
+
+"""Setup script for the package."""
+
+import io
+import os
+import sys
+import logging
+
+import setuptools
+
+
+PACKAGE_NAME = 'niaaml'
+MINIMUM_PYTHON_VERSION = '3.6.1'
+
+
+def check_python_version():
+    """Exit when the Python version is too low."""
+    if sys.version < MINIMUM_PYTHON_VERSION:
+        sys.exit("Python {0}+ is required.".format(MINIMUM_PYTHON_VERSION))
+
+
+def read_package_variable(key, filename='__init__.py'):
+    """Read the value of a variable from the package without importing."""
+    module_path = os.path.join(PACKAGE_NAME, filename)
+    with open(module_path) as module:
+        for line in module:
+            parts = line.strip().split(' ', 2)
+            if parts[:-1] == [key, '=']:
+                return parts[-1].strip("'")
+    logging.warning("'%s' not found in '%s'", key, module_path)
+    return None
+
+
+def build_description():
+    """Build a description for the project from documentation files."""
+    try:
+        readme = io.open("README.rst", encoding="UTF-8").read()
+    except IOError:
+        return "<placeholder>"
+    else:
+        return readme
+
+
+check_python_version()
+
+PACKAGE_VERSION = read_package_variable('__version__')
+
+setuptools.setup(
+    name=PACKAGE_NAME,
+    version=PACKAGE_VERSION,
+    description="""
+        Python automated machine learning framework.
+        """,
+    url='https://github.com/lukapecnik/NiaAML',
+    author='lukapecnik',
+    author_email='lukapecnik96@gmail.com',
+    packages=setuptools.find_packages(),
+    long_description=build_description(),
+    license='MIT',
+    classifiers=[
+        'Development Status :: 4 - Beta',
+        'Intended Audience :: Developers',
+        'Intended Audience :: Science/Research',
+        'Natural Language :: English',
+        'Operating System :: OS Independent',
+        'Programming Language :: Python',
+        'Programming Language :: Python :: 3',
+        'Programming Language :: Python :: 3.6',
+        'Programming Language :: Python :: 3.7',
+        'Programming Language :: Python :: 3.8',
+        'Topic :: Scientific/Engineering',
+        'Topic :: Software Development'
+    ],
+    tests_requires=[
+        'sphinx >= 3.3.1'
+        'sphinx-rtd-theme >= 0.5.0'
+        'coveralls >= 2.2.0'
+    ],
+    install_requires=[
+        'numpy >= 1.19.1',
+        'scikit-learn >= 0.23.2',
+        'NiaPy >= 2.0.0rc11',
+        'pandas >= 1.1.4'
+    ]
+)