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api.rst

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API Reference

This detailed reference lists all the classes and functions contained in the package. If you are just looking to get started, read the /tutorial/index first.

lumicks.pylake

File channel.Slice fdcurve.FdCurve kymo.Kymo scan.Scan point_scan.PointScan correlated_stack.CorrelatedStack

Force calibration

calculate_power_spectrum fit_power_spectrum PassiveCalibrationModel force_calibration.power_spectrum.PowerSpectrum force_calibration.power_spectrum_calibration.CalibrationResults

FD Fitting

fitting.model.Model FdFit parameter_trace

force_offset distance_offset marko_siggia_ewlc_force marko_siggia_ewlc_distance marko_siggia_simplified inverted_marko_siggia_simplified odijk inverted_odijk freely_jointed_chain inverted_freely_jointed_chain twistable_wlc inverted_twistable_wlc

Kymotracking

kymotracker.kymoline.KymoLine track_greedy track_lines filter_lines refine_lines_centroid refine_lines_gaussian kymotracker.detail.binding_times.BindingDwelltimes kymotracker.detail.binding_times.BindingDwelltimesBootstrap

Notebook widgets

FdRangeSelector FdDistanceRangeSelector

Population Dynamics

GaussianMixtureModel