This detailed reference lists all the classes and functions contained in the package. If you are just looking to get started, read the :doc:`/tutorial/index` first.
.. currentmodule:: lumicks.pylake
.. autosummary:: :toctree: _api :template: class.rst File channel.Slice fdcurve.FdCurve fdensemble.FdEnsemble kymo.Kymo scan.Scan point_scan.PointScan ImageStack ColorAdjustment ScaleBar :template: instance.rst colormaps :template: function.rst download_from_doi
.. autosummary:: :toctree: _api :template: class.rst PassiveCalibrationModel ActiveCalibrationModel force_calibration.power_spectrum.PowerSpectrum force_calibration.power_spectrum_calibration.CalibrationResults :template: function.rst calibrate_force calculate_power_spectrum fit_power_spectrum viscosity_of_water
.. autosummary:: :toctree: _api :template: class.rst fitting.model.Model FdFit :template: function.rst parameter_trace
Available models
.. autosummary:: :toctree: _api :template: function.rst force_offset distance_offset wlc_marko_siggia_force wlc_marko_siggia_distance ewlc_marko_siggia_force ewlc_marko_siggia_distance ewlc_odijk_force ewlc_odijk_distance dsdna_ewlc_odijk_distance twlc_force twlc_distance efjc_force efjc_distance ssdna_efjc_distance
.. autosummary:: :toctree: _api :template: class.rst kymotracker.kymotrack.KymoTrack kymotracker.kymotrack.KymoTrackGroup kymotracker.detail.msd_estimation.DiffusionEstimate kymotracker.detail.msd_estimation.EnsembleMSD KymoWidgetGreedy :template: function.rst track_greedy track_lines filter_tracks refine_tracks_centroid refine_tracks_gaussian
.. autosummary:: :toctree: _api :template: class.rst KymoWidgetGreedy lumicks.pylake.nb_widgets.range_selector.SliceRangeSelectorWidget FdRangeSelector FdDistanceRangeSelector lumicks.pylake.nb_widgets.image_editing.ImageEditorWidget
.. autosummary:: :toctree: _api :template: class.rst GaussianMixtureModel DwelltimeModel population.dwelltime.DwelltimeBootstrap population.dwelltime.DwelltimeProfiles
.. autosummary:: :toctree: _api :template: class.rst DistanceCalibration ForceBaseLine PiezoTrackingCalibration PiezoForceDistance
.. autosummary:: :toctree: _api :template: function.rst simulation.simulate_diffusive_tracks