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setup.py
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setup.py
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import setuptools
with open("README.md", "r") as fh:
long_description = fh.read()
setuptools.setup(
name="Giraffe_View",
version="0.2.1",
author="Xudong Liu",
author_email="xudongliu98@gmail.com",
description="Giraffe_View is specially designed to provide a comprehensive assessment of the accuracy of long-read sequencing datasets obtained from both the PacBio and Nanopore platforms.",
long_description=long_description,
long_description_content_type="text/markdown",
url="https://github.com/lxd98/Giraffe_View",
packages=setuptools.find_packages(),
classifiers=[
"Programming Language :: Python :: 3",
"License :: OSI Approved :: MIT License",
"Operating System :: OS Independent",
],
python_requires = '>=3',
install_requires=[
'pysam >= 0.17.0',
'numpy >= 1.7.0',
'pandas >= 1.5.0',
'seaborn >= 0.13.2',
'termcolor >= 2.0.0',
'biopython >= 1.6.2'
],
scripts = ["Giraffe_View/giraffe","Giraffe_View/giraffe_run_demo", "Giraffe_View/giraffe_plot", "scripts/homopolymer_count", "scripts/replot_sequencing_bias", "scripts/renormalization_sequencing_bias"]
)