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appendix_b.rst

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Appendix B

In this appendix we present alphabetical list of CellG attributes:

clusterId- cluster idclusterSurface- total surface of a cluster that a given cell belongs to. Needs ClusterSurface Pluginecc- eccentricity of cell . Needs MomentOfInertia pluginextraAttribPtr- a C++ pointer to Python dictionary attached to each cellflag- integervariable- unused. Can be used from PythonfluctAmpl- fluctuation amplitude. Default valueis-1iXX- xx component of inertia tensor. Needs MomentOfInertia PluginiXY- xy component of inertia tensor. Needs MomentOfInertia PluginiXZ- xz component of inertia tensor. Needs MomentOfInertia PluginiYY- yy component of inertia tensor. Needs MomentOfInertia PluginiYZ- yz component of inertia tensor. Needs MomentOfInertia PluginiZZ- zz component of inertia tensor. Needs MomentOfInertia Pluginid- cell idlX- x component of orientation vector. Set by MomentOfInertialY- y component of orientation vector. Set by MomentOfInertialZ- z component of orientation vector. Set by MomentOfInertialambdaClusterSurface- lambda (constraint strength) of cluster surface constraint.Needs ClusterSurface PluginlambdaSurface- lambda (constraint strength) of surface constraint. Needs Surface PluginlambdaVecX- x component of force applied to cell. Needs ExternalPotential PluginlambdaVecY- y component of force applied to cell. Needs ExternalPotential PluginlambdaVecZ- z component of force applied to cell. Needs ExternalPotential PluginlambdaVolume- lambda (constraint strength) of volume constraint. Needs Volume Pluginsubtype- currently unusedsurface- instantaneous cell surface. Needs Surface or SurfaceTracker plugintargetClusterSurface- target value of cluster surface constraint.Needs ClusterSurface PlugintargetSurface- target value of surface constraint. Needs Surface PlugintargetVolume- target value of volume constraint. Needs Volume Plugintype- cell typevolume- instantaneous cell volume. Needs VolumeTracker plugin which is loaded by default by every CC3D simulation.xCM- numerator of x-component expression for cell centroidxCOM- x component of cell centroidxCOMPrev- x component of cell centroid from previous MCSyCM- numerator of y-component expression for cell centroidyCOM- y component of cell centroidyCOMPrev- y component of cell centroid from previous MCSzCM- numerator of z-component expression for cell centroidzCOM- z component of cell centroidzCOMPrev`` - z component of cell centroid from previous MCS