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Portfile
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# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
PortSystem 1.0
PortGroup R 1.0
R.setup bioconductor Bioconductor ShortRead 1.62.0
revision 0
categories-append bioconductor
maintainers nomaintainer
license Artistic-2
description FASTQ input and manipulation
long_description {*}${description}
checksums rmd160 da8875044bccc06edae361e1845e5c96373aeac4 \
sha256 550ead16ef1aa2dca0f221a570ca8216b077d1627701c824cf45773145c7b174 \
size 5313872
depends_lib-append port:R-Biobase \
port:R-BiocGenerics \
port:R-BiocParallel \
port:R-Biostrings \
port:R-GenomeInfoDb \
port:R-GenomicAlignments \
port:R-GenomicRanges \
port:R-hwriter \
port:R-IRanges \
port:R-latticeExtra \
port:R-pwalign \
port:R-Rhtslib \
port:R-Rsamtools \
port:R-S4Vectors \
port:R-XVector \
port:R-zlibbioc
depends_test-append port:R-BiocStyle \
port:R-biomaRt \
port:R-RUnit \
port:R-GenomicFeatures \
port:R-yeastNagalakshmi
# One example fails: https://github.com/Bioconductor/ShortRead/issues/13
test.run yes