Feat: BAI support for random accessing BAM file #449
Merged
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BAI (BAM index) file is now supported in MACS3/IO/BAM.pyx. The reader in BAM.pyx is named as
BAMaccessor
. Now, the BAM file as input forcallvar
doesn't have to be a subset of the original BAM file.callvar
will useBAMaccessor
to retrieve the reads from indexed BAM (with BAI) file located in given peak regions. Corresponding unit tests andcmdlinetest
have been implemented.