AttributeError: module 'numpy' has no attribute 'int'.

[Journeyant]

Hi, Magdoll,
After I installed the cDNA_cupcake, I ran the "collapse_isoforms_by_sam.py", but I'm getting the following error:

Traceback (most recent call last):
File ".../SQANTI3_v5.2/cDNA_Cupcake/cDNA_Cupcake/cupcake/tofu/./collapse_isoforms_by_sam.py", line 31, in
from cupcake.tofu.branch import branch_simple2
File ".../anaconda3/envs/SQANTI3-5.2/lib/python3.10/site-packages/cupcake/tofu/branch/branch_simple2.py", line 6, in
import cupcake.tofu.branch.c_branch as c_branch
File "cupcake/tofu/branch/c_branch.pyx", line 6, in init cupcake.tofu.branch.c_branch
File ".../anaconda3/envs/SQANTI3-5.2/lib/python3.10/site-packages/numpy/init.py", line 324, in getattr
raise AttributeError(former_attrs[attr])
AttributeError: module 'numpy' has no attribute 'int'.
np.int was a deprecated alias for the builtin int. To avoid this error in existing code, use int by itself. Doing this will not modify any behavior and is safe. When replacing np.int, you may wish to use e.g. np.int64 or np.int32 to specify the precision. If you wish to review your current use, check the release note link for additional information.
The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations

What should I do?
It would be very helpful if you could help me with this problem. Thank you. @Magdoll
Journeyant

[tky199996]

I encountered the same problem as you，Have you solved this problem?

[Magdoll]

Hi @tky199996 - Cupcake is no longer supported. See my other comments.