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ViMO

Visualizer for Meta-Omics (ViMO) is an interactive R-Shiny-based application to facilitate the data integration between metagenomics, metatranscriptomics and metaproteomics. At the same time ViMO aims to provide the user with interactive, publication-ready, and relevant graphical representations of the data.

ViMO can be accessed online here:
https://magnusarntzen.shinyapps.io/VisualizerForMetaOmics/

ViMO integrate data from

  • Metagenomics
  • Metatranscriptomics
  • Metaproteomics
  • Taxonomy
  • Quality measures
  • KEGG functions and module completion
  • Carbohydrate-active enzymes (CAZymes)

ViMO makes plots of:

  • MAG quality
  • MAG abundance in various files
  • CAZyme categories in various MAGs and their abundancies at transcript- and protein-level
  • KEGG categories in various MAGs and their abundancies at transcript- and protein-level
  • KEGG module completion fractions to see the metabolic potential for each MAG

Some example output:

Fig1 Fig2 Fig3

Bug Reports

Please report bugs through the GitHub issues system.

Copyright (C) 2023, Magnus Arntzen, Norwegian University of Life Science