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<!DOCTYPE html>
<!-- START: inst/pkgdown/templates/layout.html --><!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><title>Version Control with Git: Hosting</title><meta name="viewport" content="width=device-width, initial-scale=1"><link rel="stylesheet" type="text/css" href="assets/styles.css"><script src="assets/scripts.js" type="text/javascript"></script><!-- mathjax --><script type="text/x-mathjax-config">
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13. Hosting
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<h1>Hosting</h1>
<p> Last updated on 2023-11-14 |
<a href="https://github.com/mambelli/git-novice/edit/main/episodes/13-hosting.md" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
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<ul><li>Where should I host my version control repositories?</li>
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<p>The second big question for groups that want to open up their work is
where to host their code and data. One option is for the lab, the
department, or the university to provide a server, manage accounts and
backups, and so on. The main benefit of this is that it clarifies who
owns what, which is particularly important if any of the material is
sensitive (i.e., relates to experiments involving human subjects or may
be used in a patent application). The main drawbacks are the cost of
providing the service and its longevity: a scientist who has spent ten
years collecting data would like to be sure that data will still be
available ten years from now, but that’s well beyond the lifespan of
most of the grants that fund academic infrastructure.</p>
<p>Another option is to purchase a domain and pay an Internet service
provider (ISP) to host it. This gives the individual or group more
control, and sidesteps problems that can arise when moving from one
institution to another, but requires more time and effort to set up than
either the option above or the option below.</p>
<p>The third option is to use a public hosting service like <a href="https://github.com" class="external-link">GitHub</a>, <a href="https://gitlab.com" class="external-link">GitLab</a>, or <a href="https://bitbucket.org" class="external-link">BitBucket</a>. Each of these services
provides a web interface that enables people to create, view, and edit
their code repositories. These services also provide communication and
project management tools including issue tracking, wiki pages, email
notifications, and code reviews. These services benefit from economies
of scale and network effects: it’s easier to run one large service well
than to run many smaller services to the same standard. It’s also easier
for people to collaborate. Using a popular service can help connect your
project with communities already using the same service.</p>
<p>As an example, Software Carpentry <a href="https://github.com/swcarpentry/" class="external-link">is on GitHub</a> where you can
find the <a href="https://github.com/swcarpentry/git-novice/blob/main/episodes/13-hosting.md" class="external-link">source
for this page</a>. Anyone with a GitHub account can suggest changes to
this text.</p>
<p>GitHub repositories can also be assigned DOIs, <a href="https://guides.github.com/activities/citable-code/" class="external-link">by connecting
its releases to Zenodo</a>. For example, <a href="https://zenodo.org/record/7908089" class="external-link"><code>10.5281/zenodo.7908089</code></a>
is the DOI that has been “minted” for this introduction to Git.</p>
<p>Using large, well-established services can also help you quickly take
advantage of powerful tools. One such tool, continuous integration (CI),
can automatically run software builds and tests whenever code is
committed or pull requests are submitted. Direct integration of CI with
an online hosting service means this information is present in any pull
request, and helps maintain code integrity and quality standards. While
CI is still available in self-hosted situations, there is much less
setup and maintenance involved with using an online service.
Furthermore, such tools are often provided free of charge to open source
projects, and are also available for private repositories for a fee.</p>
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<p>Sharing is the ideal for science, but many institutions place
restrictions on sharing, for example to protect potentially patentable
intellectual property. If you encounter such restrictions, it can be
productive to inquire about the underlying motivations and either to
request an exception for a specific project or domain, or to push more
broadly for institutional reform to support more open science.</p>
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<p>Find out whether you are allowed to host your work openly in a public
repository. Can you do this unilaterally, or do you need permission from
someone in your institution? If so, who?</p>
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</h3>
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<p>Does your institution have a repository or repositories that you can
use to share your papers, data and software? How do institutional
repositories differ from services like <a href="https://arxiv.org/" class="external-link">arXiV</a>, <a href="https://figshare.com/" class="external-link">figshare</a>, <a href="https://github.com/" class="external-link">GitHub</a> or <a href="https://about.gitlab.com/" class="external-link">GitLab</a>?</p>
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</h3>
<div class="callout-content">
<ul><li>Projects can be hosted on university servers, on personal domains,
or on a public hosting service.</li>
<li>Rules regarding intellectual property and storage of sensitive
information apply no matter where code and data are hosted.</li>
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