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InstrumentDefinitionParser.cpp
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InstrumentDefinitionParser.cpp
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#include "MantidGeometry/Instrument/InstrumentDefinitionParser.h"
#include "MantidGeometry/Instrument/Detector.h"
#include "MantidGeometry/Instrument/ObjCompAssembly.h"
#include "MantidGeometry/Instrument/ReferenceFrame.h"
#include "MantidGeometry/Instrument/RectangularDetector.h"
#include "MantidGeometry/Instrument/XMLlogfile.h"
#include "MantidGeometry/Objects/ShapeFactory.h"
#include "MantidGeometry/Rendering/vtkGeometryCacheReader.h"
#include "MantidGeometry/Rendering/vtkGeometryCacheWriter.h"
#include "MantidKernel/ConfigService.h"
#include "MantidKernel/Logger.h"
#include "MantidKernel/ProgressBase.h"
#include "MantidKernel/UnitFactory.h"
#include "MantidKernel/Strings.h"
#include <fstream>
#include <sstream>
#include <Poco/DOM/Document.h>
#include <Poco/DOM/DOMParser.h>
#include <Poco/DOM/DOMWriter.h>
#include <Poco/DOM/Element.h>
#include <Poco/DOM/NodeFilter.h>
#include <Poco/DOM/NodeIterator.h>
#include <Poco/DOM/NodeList.h>
#include <Poco/SAX/AttributesImpl.h>
#include <boost/make_shared.hpp>
#include <boost/assign/list_of.hpp>
using namespace Mantid;
using namespace Mantid::Kernel;
using Poco::XML::DOMParser;
using Poco::XML::Document;
using Poco::XML::Element;
using Poco::XML::Node;
using Poco::XML::NodeList;
using Poco::XML::NodeIterator;
using Poco::XML::NodeFilter;
namespace Mantid
{
namespace Geometry
{
namespace
{
// initialize the static logger
Kernel::Logger g_log("InstrumentDefinitionParser");
}
//----------------------------------------------------------------------------------------------
/** Constructor
*/
InstrumentDefinitionParser::InstrumentDefinitionParser()
: m_xmlFile(boost::make_shared<NullIDFObject>()), m_cacheFile(boost::make_shared<NullIDFObject>()), pDoc(NULL), pRootElem(NULL),
hasParameterElement_beenSet(false),
m_haveDefaultFacing(false), m_deltaOffsets(false),
m_angleConvertConst(1.0),m_indirectPositions(false),
m_cachingOption(NoneApplied)
{
}
//----------------------------------------------------------------------------------------------
/** Destructor
*/
InstrumentDefinitionParser::~InstrumentDefinitionParser()
{
}
//----------------------------------------------------------------------------------------------
/** Initialize the XML parser based on an IDF xml file path.
*
* Note that this convenience initialize method actually translates the inputs into the other initialize method.
*
* @param filename :: IDF .xml path (full). This is needed mostly to find the instrument geometry cache.
* @param instName :: name of the instrument
* @param xmlText :: XML contents of IDF
*/
void InstrumentDefinitionParser::initialize(const std::string & filename, const std::string & instName, const std::string & xmlText)
{
IDFObject_const_sptr xmlFile = boost::make_shared<const IDFObject>(filename);
// Use the filename to construct the cachefile name so that there is a 1:1 map between a definition file & cache
std::string idfExt = xmlFile->getExtension();
std::string vtpFilename = filename;
static const char * vtpExt = ".vtp";
if(idfExt.empty())
{
vtpFilename += vtpExt;
}
else
{
boost::replace_last(vtpFilename, idfExt, vtpExt);
}
IDFObject_const_sptr vtpFile = boost::make_shared<const IDFObject>(vtpFilename);
this->initialize(xmlFile, vtpFile, instName, xmlText);
}
//----------------------------------------------------------------------------------------------
/** Initialize the XML parser based on an IDF xml and cached vtp file objects.
*
* @param xmlFile :: The xml file, here wrapped in a IDFObject
* @param expectedCacheFile :: Expected vtp cache file
* @param instName :: Instrument name
* @param xmlText :: XML contents of IDF
*/
void InstrumentDefinitionParser::initialize(const IDFObject_const_sptr xmlFile, const IDFObject_const_sptr expectedCacheFile, const std::string & instName, const std::string & xmlText)
{
// Handle the parameters
const std::string filename = xmlFile->getFileFullPathStr();
m_instName = instName;
m_xmlFile = xmlFile;
m_cacheFile = expectedCacheFile;
// Set up the DOM parser and parse xml file
DOMParser pParser;
try
{
pDoc = pParser.parseString(xmlText);
}
catch(Poco::Exception& exc)
{
throw Kernel::Exception::FileError(exc.displayText() + ". Unable to parse XML", filename);
}
catch(...)
{
throw Kernel::Exception::FileError("Unable to parse XML" , filename);
}
// Get pointer to root element
pRootElem = pDoc->documentElement();
if ( !pRootElem->hasChildNodes() )
{
g_log.error("XML file: " + filename + "contains no root element.");
throw Kernel::Exception::InstrumentDefinitionError("No root element in XML instrument file", filename);
}
// Create our new instrument
// We don't want the instrument name taken out of the XML file itself, it should come from the filename (or the property)
m_instrument = boost::make_shared<Instrument>(m_instName);
// Save the XML file path and contents
m_instrument->setFilename(filename);
m_instrument->setXmlText(xmlText);
}
//----------------------------------------------------------------------------------------------
/**
* Handle used in the singleton constructor for instrument file should append the value
* of the last-modified tag inside the file to determine if it is already in memory so that
* changes to the instrument file will cause file to be reloaded.
*
* @return a mangled name combining the filename and the "last-modified" attribute of the XML contents
* */
std::string InstrumentDefinitionParser::getMangledName()
{
// Use the file in preference if possible.
if(this->m_xmlFile->exists())
{
return m_xmlFile->getMangledName();
}
else if ( ! pDoc.isNull() )
{
std::string lastModified = pRootElem->getAttribute("last-modified");
if (lastModified.empty())
{
g_log.warning() << "The IDF that you are using doesn't contain a 'last-modified' field. ";
g_log.warning() << "You may not get the correct definition file loaded." << std::endl ;
}
return m_instName + lastModified;
}
else
{
throw std::runtime_error("Call InstrumentDefinitionParser::initialize() before getMangledName.");
}
}
//----------------------------------------------------------------------------------------------
/** Fully parse the IDF XML contents and returns the instrument thus created
*
* @param prog :: Optional Progress reporter object. If NULL, no progress reporting.
* @return the instrument that was created
*/
Instrument_sptr InstrumentDefinitionParser::parseXML(Kernel::ProgressBase * prog)
{
if (!pDoc)
throw std::runtime_error("Call InstrumentDefinitionParser::initialize() before parseXML.");
setValidityRange(pRootElem);
readDefaults(pRootElem->getChildElement("defaults"));
// create maps: isTypeAssembly and mapTypeNameToShape
Geometry::ShapeFactory shapeCreator;
const std::string filename = m_xmlFile->getFileFullPathStr();
Poco::AutoPtr<NodeList> pNL_type = pRootElem->getElementsByTagName("type");
if ( pNL_type->length() == 0 )
{
g_log.error("XML file: " + filename + "contains no type elements.");
throw Kernel::Exception::InstrumentDefinitionError("No type elements in XML instrument file", filename);
}
// Collect some information about types for later use including:
// * populate directory getTypeElement
// * populate directory isTypeAssemply
// * create shapes for all none assemply components and store in mapTyepNameToShape
// * If 'Outline' attribute set for assemply add attribute object_created=no to tell
// create shape for such assemply also later
unsigned long numberTypes = pNL_type->length();
for (unsigned long iType = 0; iType < numberTypes; iType++)
{
Element* pTypeElem = static_cast<Element*>(pNL_type->item(iType));
std::string typeName = pTypeElem->getAttribute("name");
// check if contain <combine-components-into-one-shape>. If this then such
// types are adjusted after this loop has completed
Poco::AutoPtr<NodeList> pNL_type_combine_into_one_shape = pTypeElem->getElementsByTagName("combine-components-into-one-shape");
if ( pNL_type_combine_into_one_shape->length() > 0 )
{
continue;
}
// Each type in the IDF must be uniquely named, hence return error if type
// has already been defined
if ( getTypeElement.find(typeName) != getTypeElement.end() )
{
g_log.error("XML file: " + filename + "contains more than one type element named " + typeName);
throw Kernel::Exception::InstrumentDefinitionError("XML instrument file contains more than one type element named " + typeName, filename);
}
getTypeElement[typeName] = pTypeElem;
// identify for now a type to be an assemble by it containing elements
// with tag name 'component'
Poco::AutoPtr<NodeList> pNL_local = pTypeElem->getElementsByTagName("component");
if (pNL_local->length() == 0)
{
isTypeAssembly[typeName] = false;
// for now try to create a geometry shape associated with every type
// that does not contain any component elements
mapTypeNameToShape[typeName] = shapeCreator.createShape(pTypeElem);
mapTypeNameToShape[typeName]->setName(static_cast<int>(iType));
}
else
{
isTypeAssembly[typeName] = true;
if (pTypeElem->hasAttribute("outline"))
{
pTypeElem->setAttribute("object_created","no");
}
}
}
// Deal with adjusting types containing <combine-components-into-one-shape>
for (unsigned long iType = 0; iType < numberTypes; iType++)
{
Element* pTypeElem = static_cast<Element*>(pNL_type->item(iType));
std::string typeName = pTypeElem->getAttribute("name");
// In this loop only interested in types containing <combine-components-into-one-shape>
Poco::AutoPtr<NodeList> pNL_type_combine_into_one_shape = pTypeElem->getElementsByTagName("combine-components-into-one-shape");
const unsigned long nelements = pNL_type_combine_into_one_shape->length();
if ( nelements == 0 )
continue;
// Each type in the IDF must be uniquely named, hence return error if type
// has already been defined
if ( getTypeElement.find(typeName) != getTypeElement.end() )
{
g_log.error("XML file: " + filename + "contains more than one type element named " + typeName);
throw Kernel::Exception::InstrumentDefinitionError("XML instrument file contains more than one type element named " + typeName, filename);
}
getTypeElement[typeName] = pTypeElem;
InstrumentDefinitionParser helper;
helper.adjust(pTypeElem, isTypeAssembly, getTypeElement);
isTypeAssembly[typeName] = false;
mapTypeNameToShape[typeName] = shapeCreator.createShape(pTypeElem);
mapTypeNameToShape[typeName]->setName(static_cast<int>(iType));
}
// create hasParameterElement
Poco::AutoPtr<NodeList> pNL_parameter = pRootElem->getElementsByTagName("parameter");
unsigned long numParameter = pNL_parameter->length();
hasParameterElement.reserve(numParameter);
// It turns out that looping over all nodes and checking if their nodeName is equal
// to "parameter" is much quicker than looping over the pNL_parameter NodeList.
Poco::XML::NodeIterator it(pRootElem, Poco::XML::NodeFilter::SHOW_ELEMENT);
Poco::XML::Node* pNode = it.nextNode();
while(pNode)
{
if (pNode->nodeName() == "parameter")
{
Element* pParameterElem = static_cast<Element*>(pNode);
hasParameterElement.push_back( static_cast<Element*>(pParameterElem->parentNode()) );
}
pNode = it.nextNode();
}
hasParameterElement_beenSet = true;
// See if any parameters set at instrument level
setLogfile(m_instrument.get(), pRootElem, m_instrument->getLogfileCache());
//
// do analysis for each top level compoment element
//
Poco::AutoPtr<NodeList> pNL_comp = pRootElem->childNodes(); // here get all child nodes
unsigned long pNL_comp_length = pNL_comp->length();
if (prog) prog->resetNumSteps(pNL_comp_length, 0.0, 1.0);
for (unsigned long i = 0; i < pNL_comp_length; i++)
{
if(prog) prog->report("Loading instrument Definition");
// we are only interest in the top level component elements hence
// the reason for the if statement below
if ( (pNL_comp->item(i))->nodeType() == Node::ELEMENT_NODE &&
((pNL_comp->item(i))->nodeName()).compare("component") == 0 )
{
const Element* pElem = static_cast<Element*>(pNL_comp->item(i));
IdList idList; // structure to possibly be populated with detector IDs
// Get all <location> and <locations> elements contained in component element
// just for the purpose of a IDF syntax check
Poco::AutoPtr<NodeList> pNL_location = pElem->getElementsByTagName("location");
Poco::AutoPtr<NodeList> pNL_locations = pElem->getElementsByTagName("locations");
// do a IDF syntax check
if (pNL_location->length() == 0 && pNL_locations->length() == 0)
{
g_log.error(std::string("A component element must contain at least one <location> or <locations> element") +
" even if it is just an empty location element of the form <location />");
throw Kernel::Exception::InstrumentDefinitionError(
std::string("A component element must contain at least one <location> or <locations> element") +
" even if it is just an empty location element of the form <location />", filename);
}
// Loop through all <location> and <locations> elements of this component by looping
// all the child nodes and then see if any of these nodes are either <location> or
// <locations> elements. Done this way order these locations are processed is the
// order they are listed in the IDF. The latter needed to get detector IDs assigned
// as expected
Poco::AutoPtr<NodeList> pNL_childs = pElem->childNodes(); // here get all child nodes
unsigned long pNL_childs_length = pNL_childs->length();
for (unsigned long iLoc = 0; iLoc < pNL_childs_length; iLoc++)
{
if ( (pNL_childs->item(iLoc))->nodeType() == Node::ELEMENT_NODE &&
( ((pNL_childs->item(iLoc))->nodeName()).compare("location") == 0 || ((pNL_childs->item(iLoc))->nodeName()).compare("locations") == 0 )
)
{
// if a <location> element
if ( ((pNL_childs->item(iLoc))->nodeName()).compare("location") == 0 )
{
const Element* pLocElem = static_cast<Element*>(pNL_childs->item(iLoc));
// process differently depending on whether component is and assembly or leaf
if ( isAssembly(pElem->getAttribute("type")) )
{
appendAssembly(m_instrument.get(), pLocElem, pElem, idList);
}
else
{
appendLeaf(m_instrument.get(), pLocElem, pElem, idList);
}
}
// if a <locations> element
if ( ((pNL_childs->item(iLoc))->nodeName()).compare("locations") == 0 )
{
const Element* pLocElems = static_cast<Element*>(pNL_childs->item(iLoc));
// append <locations> elements in <locations>
appendLocations(m_instrument.get(), pLocElems, pElem, idList);
}
}
} // finished looping over all childs of this component
// A check
if (idList.counted != static_cast<int>(idList.vec.size()) )
{
std::stringstream ss1, ss2;
ss1 << idList.vec.size(); ss2 << idList.counted;
if( !pElem->hasAttribute("idlist") ) {
g_log.error("No detector ID list found for detectors of type "
+ pElem->getAttribute("type"));
}
else if( idList.vec.size() == 0) {
g_log.error("No detector IDs found for detectors in list "
+ pElem->getAttribute("idlist") +
"for detectors of type"
+ pElem->getAttribute("type"));
} else {
g_log.error("The number of detector IDs listed in idlist named "
+ pElem->getAttribute("idlist") +
" is larger than the number of detectors listed in type = "
+ pElem->getAttribute("type"));
}
throw Kernel::Exception::InstrumentDefinitionError(
"Number of IDs listed in idlist (=" + ss1.str() + ") is larger than the number of detectors listed in type = "
+ pElem->getAttribute("type") + " (=" + ss2.str() + ").", filename);
}
idList.reset();
}
}
// Don't need this anymore (if it was even used) so empty it out to save memory
m_tempPosHolder.clear();
// Read in or create the geometry cache file
m_cachingOption = setupGeometryCache();
// Add/overwrite any instrument params with values specified in <component-link> XML elements
setComponentLinks(m_instrument, pRootElem);
if ( m_indirectPositions ) createNeutronicInstrument();
// And give back what we created
return m_instrument;
}
//-----------------------------------------------------------------------------------------------------------------------
/** Assumes second argument is a XML location element and its parent is a component element
* which is assigned to be an assembly. This method appends the parent component element of
* the location element to the CompAssembly passed as the 1st arg. Note this method may call
* itself, i.e. it may act recursively.
*
* @param parent :: CompAssembly to append new component to
* @param pLocElems :: Poco::XML element that points to a locations element in an instrument description XML file, which optionally may be detached (meaning it is not required to be part of the DOM tree of the IDF)
* @param pCompElem :: The Poco::XML \<component\> element that contains the \<locations\> element
* @param idList :: The current IDList
*/
void InstrumentDefinitionParser::appendLocations(Geometry::ICompAssembly* parent, const Poco::XML::Element*pLocElems, const Poco::XML::Element* pCompElem, IdList& idList)
{
// create detached <location> elements from <locations> element
const std::string xmlLocation = convertLocationsElement(pLocElems);
// parse converted <locations> output
DOMParser pLocationsParser;
Poco::AutoPtr<Document> pLocationsDoc;
try
{
pLocationsDoc = pLocationsParser.parseString(xmlLocation);
}
catch(...)
{
throw Kernel::Exception::InstrumentDefinitionError("Unable to parse XML string", xmlLocation);
}
// Get pointer to root element
const Element* pRootLocationsElem = pLocationsDoc->documentElement();
if ( !pRootLocationsElem->hasChildNodes() )
{
throw Kernel::Exception::InstrumentDefinitionError("No root element in XML string", xmlLocation);
}
Poco::AutoPtr<NodeList> pNL_locInLocs = pRootLocationsElem->getElementsByTagName("location");
unsigned long pNL_locInLocs_length = pNL_locInLocs->length();
for (unsigned long iInLocs = 0; iInLocs < pNL_locInLocs_length; iInLocs++)
{
const Element* pLocInLocsElem = static_cast<Element*>(pNL_locInLocs->item(iInLocs));
if ( isAssembly(pCompElem->getAttribute("type")) )
{
appendAssembly(parent, pLocInLocsElem, pCompElem, idList);
}
else
{
appendLeaf(parent, pLocInLocsElem, pCompElem, idList);
}
}
}
//-----------------------------------------------------------------------------------------------------------------------
/** Save DOM tree to xml file. This method was initially added for testing purpose
* but may be useful for other purposes. During the parsing of the DOM tree
* in parseXML() the tree may be modified, e.g. if <combine-components-into-one-shape>
* is used.
*
* @param outFilename :: Output filename
*/
void InstrumentDefinitionParser::saveDOM_Tree(std::string& outFilename)
{
Poco::XML::DOMWriter writer;
writer.setNewLine("\n");
writer.setOptions(Poco::XML::XMLWriter::PRETTY_PRINT);
std::ofstream outFile(outFilename.c_str());
writer.writeNode(outFile, pDoc);
outFile.close();
}
//-----------------------------------------------------------------------------------------------------------------------
/** Set location (position) of comp as specified in XML location element.
*
* @param comp :: To set position/location off
* @param pElem :: Poco::XML element that points a \<location\> element, which optionally may be detached (meaning it is not required to be part of the DOM tree of the IDF)
* @param angleConvertConst :: constant for converting deg to rad
* @param deltaOffsets :: radial position offsets
*
* @throw logic_error Thrown if second argument is not a pointer to a 'location' XML element
*/
void InstrumentDefinitionParser::setLocation(Geometry::IComponent* comp, const Poco::XML::Element* pElem,
const double angleConvertConst, const bool deltaOffsets)
{
comp->setPos(getRelativeTranslation(comp, pElem, angleConvertConst, deltaOffsets));
// Rotate coordinate system of this component
if ( pElem->hasAttribute("rot") )
{
double rotAngle = angleConvertConst*atof( (pElem->getAttribute("rot")).c_str() ); // assumed to be in degrees
double axis_x = 0.0;
double axis_y = 0.0;
double axis_z = 1.0;
if ( pElem->hasAttribute("axis-x") )
axis_x = atof( (pElem->getAttribute("axis-x")).c_str() );
if ( pElem->hasAttribute("axis-y") )
axis_y = atof( (pElem->getAttribute("axis-y")).c_str() );
if ( pElem->hasAttribute("axis-z") )
axis_z = atof( (pElem->getAttribute("axis-z")).c_str() );
comp->rotate(Kernel::Quat(rotAngle, Kernel::V3D(axis_x,axis_y,axis_z)));
}
// Check if sub-elements <trans> or <rot> of present - for now ignore these if m_deltaOffset = true
Element* pRecursive = NULL;
Element* tElem = pElem->getChildElement("trans");
Element* rElem = pElem->getChildElement("rot");
bool stillTransElement = true;
bool firstRound = true; // during first round below pRecursive has not been set up front
while ( stillTransElement )
{
// figure out if child element is <trans> or <rot> or none of these
if (firstRound)
{
firstRound = false;
}
else
{
tElem = pRecursive->getChildElement("trans");
rElem = pRecursive->getChildElement("rot");
}
if (tElem && rElem)
{
// if both a <trans> and <rot> child element present. Ignore <rot> element
rElem = NULL;
}
if (!tElem && !rElem)
{
stillTransElement = false;
}
Kernel::V3D posTrans;
if (tElem)
{
posTrans = getRelativeTranslation(comp, tElem, angleConvertConst, deltaOffsets);
// to get the change in translation relative to current rotation of comp
Geometry::CompAssembly compToGetRot;
Geometry::CompAssembly compRot;
compRot.setRot(comp->getRotation());
compToGetRot.setParent(&compRot);
compToGetRot.setPos(posTrans);
// Apply translation
comp->translate(compToGetRot.getPos());
// for recursive action
pRecursive = tElem;
} // end translation
if (rElem)
{
double rotAngle = angleConvertConst*atof( (rElem->getAttribute("val")).c_str() ); // assumed to be in degrees
double axis_x = 0.0;
double axis_y = 0.0;
double axis_z = 1.0;
if ( rElem->hasAttribute("axis-x") )
axis_x = atof( (rElem->getAttribute("axis-x")).c_str() );
if ( rElem->hasAttribute("axis-y") )
axis_y = atof( (rElem->getAttribute("axis-y")).c_str() );
if ( rElem->hasAttribute("axis-z") )
axis_z = atof( (rElem->getAttribute("axis-z")).c_str() );
comp->rotate(Kernel::Quat(rotAngle, Kernel::V3D(axis_x,axis_y,axis_z)));
// for recursive action
pRecursive = rElem;
}
} // end while
}
//-----------------------------------------------------------------------------------------------------------------------
/** Calculate the position of comp relative to its parent from info provided by \<location\> element.
*
* @param comp :: To set position/location off
* @param pElem :: Poco::XML element that points a \<location\> element, which optionally may be detached (meaning it is not required to be part of the DOM tree of the IDF)
* @param angleConvertConst :: constant for converting deg to rad
* @param deltaOffsets :: radial position offsets
*
* @return Thrown if second argument is not a pointer to a 'location' XML element
*/
Kernel::V3D InstrumentDefinitionParser::getRelativeTranslation(const Geometry::IComponent* comp, const Poco::XML::Element* pElem,
const double angleConvertConst, const bool deltaOffsets)
{
Kernel::V3D retVal; // position relative to parent
// Polar coordinates can be labelled as (r,t,p) or (R,theta,phi)
if ( pElem->hasAttribute("r") || pElem->hasAttribute("t") || pElem->hasAttribute("p") ||
pElem->hasAttribute("R") || pElem->hasAttribute("theta") || pElem->hasAttribute("phi") )
{
double R=0.0, theta=0.0, phi=0.0;
if ( pElem->hasAttribute("r") ) R = atof((pElem->getAttribute("r")).c_str());
if ( pElem->hasAttribute("t") ) theta = angleConvertConst*atof((pElem->getAttribute("t")).c_str());
if ( pElem->hasAttribute("p") ) phi = angleConvertConst*atof((pElem->getAttribute("p")).c_str());
if ( pElem->hasAttribute("R") ) R = atof((pElem->getAttribute("R")).c_str());
if ( pElem->hasAttribute("theta") ) theta = angleConvertConst*atof((pElem->getAttribute("theta")).c_str());
if ( pElem->hasAttribute("phi") ) phi = angleConvertConst*atof((pElem->getAttribute("phi")).c_str());
if ( deltaOffsets )
{
// In this case, locations given are radial offsets to the (radial) position of the parent,
// so need to do some extra calculation before they're stored internally as x,y,z offsets.
// Temporary vector to hold the parent's absolute position (will be 0,0,0 if no parent)
Kernel::V3D parentPos;
// Get the parent's absolute position (if the component has a parent)
if ( comp->getParent() )
{
std::map<const Geometry::IComponent*, SphVec>::iterator it;
it = m_tempPosHolder.find(comp);
SphVec parent;
if ( it == m_tempPosHolder.end() )
parent = m_tempPosHolder[comp->getParent().get()];
else
parent = it->second;
// Add to the current component to get its absolute position
R += parent.r;
theta += parent.theta;
phi += parent.phi;
// Set the temporary V3D with the parent's absolute position
parentPos.spherical(parent.r,parent.theta,parent.phi);
}
// Create a temporary vector that holds the absolute r,theta,phi position
// Needed to make things work in situation when a parent object has a phi value but a theta of zero
SphVec tmp(R,theta,phi);
// Add it to the map with the pointer to the Component object as key
m_tempPosHolder[comp] = tmp;
// Create a V3D and set its position to be the child's absolute position
Kernel::V3D absPos;
absPos.spherical(R,theta,phi);
// Subtract the two V3D's to get what we want (child's relative position in x,y,z)
retVal = absPos - parentPos;
}
else
{
// In this case, the value given represents a vector from the parent to the child
retVal.spherical(R,theta,phi);
}
}
else
{
double x=0.0, y=0.0, z=0.0;
if ( pElem->hasAttribute("x") ) x = atof((pElem->getAttribute("x")).c_str());
if ( pElem->hasAttribute("y") ) y = atof((pElem->getAttribute("y")).c_str());
if ( pElem->hasAttribute("z") ) z = atof((pElem->getAttribute("z")).c_str());
retVal(x,y,z);
}
return retVal;
}
//-----------------------------------------------------------------------------------------------------------------------
/** Get parent \<component\> element of \<location\> element.
*
* @param pLocElem :: Poco::XML element that points a location element in the XML doc
* @return Parent XML element to a location XML element
*
* @throw logic_error Thrown if argument is not a child of component element
*/
Poco::XML::Element* InstrumentDefinitionParser::getParentComponent(const Poco::XML::Element* pLocElem)
{
if ( (pLocElem->tagName()).compare("location") && (pLocElem->tagName()).compare("locations") )
{
std::string tagname = pLocElem->tagName();
g_log.error("Argument to function getParentComponent must be a pointer to an XML element with tag name location or locations.");
throw std::logic_error( std::string("Argument to function getParentComponent must be a pointer to an XML element")
+ "with tag name location or locations." + " The tag name is " + tagname);
}
// The location element is required to be a child of a component element. Get this component element
Node* pCompNode = pLocElem->parentNode();
Element* pCompElem;
if (pCompNode->nodeType() == 1)
{
pCompElem = static_cast<Element*>(pCompNode);
if ( (pCompElem->tagName()).compare("component") )
{
g_log.error("Argument to function getParentComponent must be a XML element sitting inside a component element.");
throw std::logic_error( "Argument to function getParentComponent must be a XML element sitting inside a component element." );
}
}
else
{
g_log.error("Argument to function getParentComponent must be a XML element whos parent is an element.");
throw std::logic_error( "Argument to function getParentComponent must be a XML element whos parent is an element." );
}
return pCompElem;
}
//-----------------------------------------------------------------------------------------------------------------------
/** Get name of a location element. It will return the value of the attribute 'name', or the
* parent's name attribute, or the parent's type, if all else fails.
*
* @param pElem :: Poco::XML element that points to a \<location\> element, which optionally may be detached (meaning it is not required to be part of the DOM tree of the IDF)
* @param pCompElem :: The Poco::XML \<component\> element that contain the location element, which may optionally be detached from the DOM tree also
* @return name of location element
*/
std::string InstrumentDefinitionParser::getNameOfLocationElement(const Poco::XML::Element* pElem, const Poco::XML::Element* pCompElem)
{
std::string retVal;
if ( pElem->hasAttribute("name") )
retVal = pElem->getAttribute("name");
else if ( pCompElem->hasAttribute("name") )
{
retVal = pCompElem->getAttribute("name");
}
else
{
retVal = pCompElem->getAttribute("type");
}
return retVal;
}
//------------------------------------------------------------------------------------------------------------------------------
/** Checks the validity range in the IDF and adds it to the instrument object
* @param pRootElem A pointer to the root element of the instrument definition
*/
void InstrumentDefinitionParser::setValidityRange(const Poco::XML::Element* pRootElem)
{
const std::string filename = m_xmlFile->getFileFullPathStr();
// check if IDF has valid-from and valid-to tags defined
if ( !pRootElem->hasAttribute("valid-from") )
{
throw Kernel::Exception::InstrumentDefinitionError("<instrument> element must contain a valid-from tag", filename);
}
else
{
try
{
DateAndTime d(pRootElem->getAttribute("valid-from"));
m_instrument->setValidFromDate(d);
}
catch(...)
{
throw Kernel::Exception::InstrumentDefinitionError("The valid-from <instrument> tag must be a ISO8601 string", filename);
}
}
if ( !pRootElem->hasAttribute("valid-to") )
{
DateAndTime d = DateAndTime::getCurrentTime();
m_instrument->setValidToDate(d);
// Ticket #2335: no required valid-to date.
//throw Kernel::Exception::InstrumentDefinitionError("<instrument> element must contain a valid-to tag", filename);
}
else
{
try
{
DateAndTime d(pRootElem->getAttribute("valid-to"));
m_instrument->setValidToDate(d);
}
catch(...)
{
throw Kernel::Exception::InstrumentDefinitionError("The valid-to <instrument> tag must be a ISO8601 string", filename);
}
}
}
PointingAlong axisNameToAxisType(std::string& input)
{
PointingAlong direction;
if(input.compare("x") == 0)
{
direction = X;
}
else if(input.compare("y") == 0)
{
direction = Y;
}
else
{
direction = Z;
}
return direction;
}
//-----------------------------------------------------------------------------------------------------------------------
/** Reads the contents of the \<defaults\> element to set member variables,
* requires m_instrument to be already set
* @param defaults :: points to the data read from the \<defaults\> element, can be null.
*/
void InstrumentDefinitionParser::readDefaults(Poco::XML::Element* defaults)
{
// Return without complaint, if there are no defaults
if(!defaults) return;
// Check whether spherical coordinates should be treated as offsets to parents position
std::string offsets;
Element* offsetElement = defaults->getChildElement("offsets");
if (offsetElement) offsets = offsetElement->getAttribute("spherical");
if ( offsets == "delta" ) m_deltaOffsets = true;
// Check whether default facing is set
Element* defaultFacingElement = defaults->getChildElement("components-are-facing");
if (defaultFacingElement)
{
m_haveDefaultFacing = true;
m_defaultFacing = parseFacingElementToV3D(defaultFacingElement);
}
// the default view is used by the instrument viewer to decide the angle to display the instrument from on start up
Element* defaultView = defaults->getChildElement("default-view");
if (defaultView)
{
m_instrument->setDefaultViewAxis(defaultView->getAttribute("axis-view"));
if ( defaultView->hasAttribute("view") )
{
m_instrument->setDefaultView( defaultView->getAttribute("view") );
}
}
// check if angle=radian has been set
Element* angleUnit = defaults->getChildElement("angle");
if (angleUnit)
{
if (angleUnit->getAttribute("unit") == "radian")
{
m_angleConvertConst = 180.0/M_PI;
std::map<std::string, std::string>& units = m_instrument->getLogfileUnit();
units["angle"] = "radian";
}
}
// Check if the IDF specifies that this is an indirect geometry instrument that includes
// both physical and 'neutronic' postions.
// Any neutronic position tags will be ignored if this tag is missing
if ( defaults->getChildElement("indirect-neutronic-positions") )
m_indirectPositions = true;
/*
Try to extract the reference frame information.
*/
//Get the target xml element.
Element* referenceFrameElement = defaults->getChildElement("reference-frame");
//Extract if available
if(referenceFrameElement)
{
using Poco::XML::XMLString;
//Get raw xml values
Element* upElement = referenceFrameElement->getChildElement("pointing-up");
Element* alongElement = referenceFrameElement->getChildElement("along-beam");
Element* handednessElement = referenceFrameElement->getChildElement("handedness");
Element* originElement = referenceFrameElement->getChildElement("origin");
//Defaults
XMLString s_alongBeam("z");
XMLString s_pointingUp("y");
XMLString s_handedness("right");
XMLString s_origin("");
//Make extractions from sub elements where possible.
if(alongElement)
{
s_alongBeam = alongElement->getAttribute("axis");
}
if(upElement)
{
s_pointingUp = upElement->getAttribute("axis");
}
if(handednessElement)
{
s_handedness = handednessElement->getAttribute("val");
}
if(originElement)
{
s_origin = originElement->getAttribute("val");
}
//Convert to input types
PointingAlong alongBeam = axisNameToAxisType(s_alongBeam);
PointingAlong pointingUp = axisNameToAxisType(s_pointingUp);
Handedness handedness = s_handedness.compare("right") == 0 ? Right : Left;
//Overwrite the default reference frame.
m_instrument->setReferenceFrame(boost::shared_ptr<ReferenceFrame>(new ReferenceFrame(pointingUp, alongBeam, handedness, s_origin)));
}
}
std::vector<std::string> InstrumentDefinitionParser::buildExcludeList(const Poco::XML::Element* const location)
{
// check if <exclude> sub-elements for this location and create new exclude list to pass on
Poco::AutoPtr<NodeList> pNLexclude = location->getElementsByTagName("exclude");
unsigned long numberExcludeEle = pNLexclude->length();
std::vector<std::string> newExcludeList;
for (unsigned long i = 0; i < numberExcludeEle; i++)
{
Element* pExElem = static_cast<Element*>(pNLexclude->item(i));
if ( pExElem->hasAttribute("sub-part") )
newExcludeList.push_back(pExElem->getAttribute("sub-part"));
}
return newExcludeList;
}
//-----------------------------------------------------------------------------------------------------------------------
/** Assumes second argument is a XML location element and its parent is a component element
* which is assigned to be an assembly. This method appends the parent component element of
* the location element to the CompAssembly passed as the 1st arg. Note this method may call
* itself, i.e. it may act recursively.
*
* @param parent :: CompAssembly to append new component to
* @param pLocElem :: Poco::XML element that points to a location element in an instrument description XML file, which optionally may be detached (meaning it is not required to be part of the DOM tree of the IDF)
* @param pCompElem :: The Poco::XML \<component\> element that contains the \<location\> element
* @param idList :: The current IDList
*/
void InstrumentDefinitionParser::appendAssembly(Geometry::ICompAssembly* parent, const Poco::XML::Element* pLocElem, const Poco::XML::Element* pCompElem, IdList& idList)
{
const std::string filename = m_xmlFile->getFileFullPathStr();
// The location element is required to be a child of a component element. Get this component element
//Element* pCompElem = InstrumentDefinitionParser::getParentComponent(pLocElem);
// Read detector IDs into idlist if required
// Note idlist may be defined for any component
// Note any new idlist found will take precedence.
if ( pCompElem->hasAttribute("idlist") )
{
std::string idlist = pCompElem->getAttribute("idlist");
if ( idlist.compare(idList.idname) )
{
Element* pFound = pCompElem->ownerDocument()->getElementById(idlist, "idname");
if ( pFound == NULL )
{
throw Kernel::Exception::InstrumentDefinitionError(
"No <idlist> with name idname=\"" + idlist + "\" present in instrument definition file.", filename);
}
idList.reset();
populateIdList(pFound, idList);
}
}
//Create the assembly that will be appended into the parent.
Geometry::ICompAssembly *ass;
// The newly added component is required to have a type. Find out what this
// type is and find all the location elements of this type. Finally loop over these
// location elements
Element* pType = getTypeElement[pCompElem->getAttribute("type")];
if (pType->hasAttribute("outline") && pType->getAttribute("outline") != "no")
{
ass = new Geometry::ObjCompAssembly(InstrumentDefinitionParser::getNameOfLocationElement(pLocElem, pCompElem),parent);
}