merge two data frames with --reconcile true leads to empty result

[matentzn]

Merging these two data frames:

# curie_map:
#   UBERON: http://purl.obolibrary.org/obo/UBERON_
#   ZFS: http://purl.obolibrary.org/obo/ZFS_
#   oio: http://www.geneontology.org/formats/oboInOwl#
#   owl: http://www.w3.org/2002/07/owl#
#   rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns#
#   rdfs: http://www.w3.org/2000/01/rdf-schema#
#   semapv: https://w3id.org/semapv/
#   skos: http://www.w3.org/2004/02/skos/core#
#   sssom: https://w3id.org/sssom/
# license: https://w3id.org/sssom/license/unspecified
# mapping_set_id: https://w3id.org/sssom/mappings/72debc9d-ca69-45e8-b46d-aef8361bedf2
# object_source: ZFS
# subject_source: UBERON
subject_id	subject_label	predicate_id	object_id	mapping_justification	subject_source	object_source
UBERON:0000069	larval stage	oio:hasDbXref	ZFS:0000048	semapv:UnspecifiedMatching	UBERON	ZFS
UBERON:0000105	life cycle stage	oio:hasDbXref	ZFS:0100000	semapv:UnspecifiedMatching	UBERON	ZFS
UBERON:0000105	life cycle stage	oio:hasDbXref	ZFS:0000000	semapv:UnspecifiedMatching	UBERON	ZFS

and

# curie_map:
#   UBERON: http://purl.obolibrary.org/obo/UBERON_
#   WBls: http://purl.obolibrary.org/obo/WBls_
#   oio: http://www.geneontology.org/formats/oboInOwl#
#   owl: http://www.w3.org/2002/07/owl#
#   rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns#
#   rdfs: http://www.w3.org/2000/01/rdf-schema#
#   semapv: https://w3id.org/semapv/
#   skos: http://www.w3.org/2004/02/skos/core#
#   sssom: https://w3id.org/sssom/
# license: https://w3id.org/sssom/license/unspecified
# mapping_set_id: https://w3id.org/sssom/mappings/c5e357f5-86df-4aaa-a30e-8a23ad523ab2
# object_source: WBls
# subject_source: UBERON
subject_id	subject_label	predicate_id	object_id	mapping_justification	subject_source	object_source
UBERON:0000066	fully formed stage	oio:hasDbXref	WBls:0000041	semapv:UnspecifiedMatching	UBERON	WBls
UBERON:0000068	embryo stage	oio:hasDbXref	WBls:0000003	semapv:UnspecifiedMatching	UBERON	WBls
UBERON:0000068	embryo stage	oio:hasDbXref	WBls:0000102	semapv:UnspecifiedMatching	UBERON	WBls
UBERON:0000068	embryo stage	oio:hasDbXref	WBls:0000092	semapv:UnspecifiedMatching	UBERON	WBls

results in an empty data frame.

Does not work:

sssom merge tmp/anatomy-mapping-uberon-FBbt.sssom.tsv tmp/anatomy-mapping-uberon-WBbt.sssom.tsv --reconcile true

Works:

sssom merge tmp/anatomy-mapping-uberon-FBbt.sssom.tsv tmp/anatomy-mapping-uberon-WBbt.sssom.tsv --reconcile false

We should also add a test to this end

[hrshdhgd]

The 2 commands you've mentioned appear to be the same

[matentzn]

Oops, fixed. --reconcile false.