run.default.cfg

{
    "mappings": {
        "name": "mappings.{wildcards.sample}",
        "time": "02:00:00",
        "threads": 16
    },
    "nanopolish_index_summary": {
        "name": "index_fastq.summary.{wildcards.sample}",
        "time": "10:00:00",
        "threads": 8
    },
    "nanopolish_index": {
        "name": "index_fastq.summary.{wildcards.sample}",
        "time": "10:00:00",
        "threads": 8
    },
    "methCalls_step": {
        "name": "methCalls.{wildcards.sample}.{wildcards.analysis}",
        "threads": 8
    },
    "join_methCalls": {
        "name": "join_methCalls.{wildcards.sample}.{wildcards.analysis}",
        "threads": 8
    },
    "nanopolish_call": {
        "name": "nanopolish_call.{wildcards.sample}.{wildcards.analysis}",
        "threads": 8,
        "time": "8:00:00"
    }
}