Plot signal distribution acorss kmers. The command allows the selection of the number of bases up and downstream around the central genomic base.
Cluster raw signal traces at bases with significant differences. Clustering is done on the difference between two runs (generally a native and amplified sample) centered on the most significantly different bases. Note that this command can be quite slow for many points, so it is advised to only use few points for plotting (<1000).
K-mer signal distribution plotting and clustering based on signal:
nanoraw plot_kmer --fast5-basedirs $g1Dir nanoraw plot_kmer --fast5-basedirs $g1Dir --read-mean nanoraw cluster_most_significant --fast5-basedirs $g1Dir \ --fast5-basedirs2 $g2Dir --2d \ --genome-fasta $genomeFn --num-regions 100 \ --r-data-filename testing.cluster_data.RData \ --statistics-filename testing.significance_values.txt